PFRMAT SS
TARGET T0128
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0128-subfamily.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 6.42137
METHOD
MODEL 1
M C 0.735
R C 0.735
G C 0.721
S C 0.658
H C 0.601
H C 0.574
H C 0.571
H C 0.589
H C 0.625
H C 0.650
G C 0.620
S C 0.444
V E 0.630
T E 0.712
T E 0.725
K E 0.763
R E 0.726
Y E 0.696
T E 0.482
L C 0.822
P C 0.893
P C 0.884
L C 0.865
P C 0.905
Y C 0.891
A C 0.934
Y H 0.675
N H 0.710
A H 0.767
L H 0.689
E H 0.577
P H 0.492
Y C 0.414
I C 0.459
S C 0.729
A H 0.920
E H 0.905
I H 0.899
M H 0.821
Q H 0.756
L H 0.702
H H 0.562
H H 0.723
Q H 0.779
K H 0.756
H H 0.798
H H 0.834
Q H 0.858
G H 0.887
Y H 0.878
V H 0.887
N H 0.846
G H 0.777
A H 0.938
N H 0.966
A H 0.975
A H 0.987
L H 0.991
E H 0.994
K H 0.994
L H 0.992
E H 0.989
K H 0.981
F H 0.956
R H 0.904
K H 0.792
G C 0.538
E C 0.652
A H 0.521
Q H 0.716
I H 0.775
D H 0.778
I H 0.838
R H 0.873
A H 0.854
V H 0.770
L H 0.710
R H 0.675
D H 0.532
L H 0.456
S E 0.414
F E 0.543
H C 0.592
L C 0.716
N C 0.755
G C 0.488
H H 0.616
I H 0.780
L H 0.861
H H 0.904
S H 0.970
I H 0.966
F H 0.953
W H 0.925
P H 0.875
N H 0.783
M H 0.492
A C 0.729
P C 0.921
P C 0.922
G C 0.912
K C 0.953
G C 0.956
G C 0.953
G C 0.917
K C 0.915
P C 0.879
G C 0.756
G H 0.591
K H 0.793
I H 0.973
A H 0.981
D H 0.988
L H 0.984
I H 0.976
N H 0.942
K H 0.892
F H 0.675
F C 0.520
G C 0.899
S C 0.726
F H 0.898
E H 0.959
K H 0.977
F H 0.980
K H 0.982
E H 0.987
E H 0.985
F H 0.992
S H 0.990
Q H 0.985
A H 0.964
A H 0.934
K H 0.882
N H 0.630
V C 0.949
E C 0.909
G C 0.822
V C 0.702
G C 0.490
W E 0.808
A E 0.941
I E 0.959
L E 0.962
V E 0.930
Y E 0.836
E E 0.660
P C 0.690
L C 0.861
E C 0.923
E C 0.895
Q E 0.542
L E 0.848
L E 0.951
I E 0.986
L E 0.986
Q E 0.974
I E 0.914
E E 0.704
K E 0.445
H C 0.528
N C 0.604
L C 0.611
M C 0.675
H C 0.668
A C 0.742
A C 0.762
D C 0.821
A C 0.555
Q H 0.408
V H 0.506
L H 0.612
L H 0.736
A H 0.701
L H 0.815
D H 0.748
V H 0.750
W H 0.806
E H 0.862
H H 0.912
A H 0.917
Y H 0.921
Y H 0.933
L H 0.890
Q H 0.861
Y H 0.828
K H 0.778
N H 0.572
D H 0.590
R C 0.590
G C 0.504
S H 0.688
Y H 0.834
V H 0.891
D H 0.834
N H 0.744
W H 0.620
W C 0.458
N C 0.570
V C 0.604
V C 0.745
N C 0.901
W H 0.934
D H 0.929
D H 0.949
V H 0.947
E H 0.965
R H 0.973
R H 0.970
L H 0.963
Q H 0.959
K H 0.939
A H 0.903
L H 0.817
N H 0.734
G C 0.500
Q C 0.531
I C 0.465
A C 0.497
L C 0.571
K C 0.732
L C 0.947
END