PFRMAT SS
TARGET T0128
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with
METHOD window units
METHOD 5 10
METHOD 7 10
METHOD 5 10
METHOD 11 3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0128-family.tuneup.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 9.15662
METHOD
MODEL 1
- C 0.902
- C 0.771
- C 0.669
T C 0.549
T C 0.471
K E 0.426
R E 0.401
Y E 0.480
T C 0.504
L C 0.848
P C 0.892
P C 0.884
L C 0.856
P C 0.892
Y C 0.842
A C 0.897
Y H 0.672
N H 0.672
A H 0.782
L H 0.831
E H 0.764
P H 0.749
Y H 0.648
I H 0.618
S H 0.480
A H 0.965
E H 0.958
I H 0.962
M H 0.956
Q H 0.945
L H 0.927
H H 0.863
H H 0.856
Q H 0.875
K H 0.857
H H 0.874
H H 0.890
Q H 0.916
G H 0.924
Y H 0.898
V H 0.896
N H 0.863
G H 0.800
A H 0.944
N H 0.965
A H 0.971
A H 0.973
L H 0.982
E H 0.986
K H 0.984
L H 0.977
E H 0.970
K H 0.950
F H 0.890
R H 0.763
K H 0.511
G C 0.664
E C 0.786
A C 0.684
Q H 0.804
I H 0.858
D H 0.890
I H 0.883
R H 0.878
A H 0.847
V H 0.779
L H 0.699
R H 0.708
D H 0.591
L C 0.462
S C 0.450
F C 0.541
H C 0.835
L C 0.797
N C 0.772
G H 0.574
H H 0.744
I H 0.899
L H 0.933
H H 0.968
S H 0.991
I H 0.991
F H 0.988
W H 0.977
P H 0.956
N H 0.904
M H 0.622
A C 0.695
P C 0.815
P C 0.813
G C 0.824
K C 0.858
G C 0.903
G C 0.901
G C 0.887
K C 0.842
- C 0.860
P C 0.895
G C 0.817
G H 0.689
K H 0.864
I H 0.973
A H 0.982
D H 0.988
L H 0.986
I H 0.978
N H 0.952
K H 0.899
F H 0.674
F C 0.545
G C 0.931
S C 0.883
F H 0.941
E H 0.979
K H 0.989
F H 0.988
K H 0.987
E H 0.988
E H 0.984
F H 0.965
S H 0.939
Q H 0.955
A H 0.905
A H 0.868
K H 0.800
N H 0.602
V C 0.722
E C 0.765
G C 0.799
V C 0.706
G C 0.483
W E 0.742
A E 0.877
I E 0.892
L E 0.898
V E 0.827
Y E 0.671
E C 0.567
P C 0.816
L C 0.881
E C 0.911
E C 0.883
Q E 0.560
L E 0.874
L E 0.962
I E 0.981
L E 0.964
Q E 0.887
I E 0.646
E C 0.599
K C 0.825
H C 0.799
N C 0.843
L C 0.749
M C 0.717
H C 0.676
A C 0.760
A C 0.853
D C 0.916
A C 0.699
Q E 0.616
V E 0.785
L E 0.867
L E 0.873
A E 0.844
L E 0.598
D C 0.430
V H 0.496
W H 0.801
E H 0.916
H H 0.953
A H 0.971
Y H 0.977
Y H 0.982
L H 0.972
Q H 0.954
Y H 0.939
K H 0.881
N H 0.683
D H 0.595
R C 0.646
G H 0.764
S H 0.884
Y H 0.928
V H 0.946
D H 0.917
N H 0.864
W H 0.758
W H 0.594
N H 0.523
V C 0.448
V C 0.553
N C 0.780
W H 0.947
D H 0.913
D H 0.905
V H 0.796
E H 0.765
R H 0.606
R C 0.615
- C 0.981
END