# TARGET T0128 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0128-family.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 11.7246 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.085 0.188 0.726 2 R 0.079 0.230 0.691 3 G 0.085 0.266 0.649 4 S 0.117 0.297 0.586 5 H 0.144 0.324 0.532 6 H 0.166 0.323 0.511 7 H 0.155 0.376 0.469 8 H 0.156 0.432 0.412 9 H 0.186 0.450 0.363 10 H 0.215 0.453 0.332 11 G 0.302 0.400 0.298 12 S 0.373 0.353 0.274 13 V 0.389 0.329 0.282 14 T 0.397 0.286 0.317 15 T 0.325 0.305 0.370 16 K 0.395 0.238 0.367 17 R 0.396 0.217 0.388 18 Y 0.499 0.107 0.394 19 T 0.411 0.087 0.502 20 L 0.127 0.030 0.843 21 P 0.068 0.036 0.896 22 P 0.053 0.063 0.884 23 L 0.077 0.069 0.854 24 P 0.066 0.045 0.889 25 Y 0.096 0.051 0.853 26 A 0.044 0.056 0.900 27 Y 0.005 0.717 0.277 28 N 0.006 0.717 0.277 29 A 0.008 0.820 0.172 30 L 0.008 0.894 0.098 31 E 0.018 0.853 0.129 32 P 0.028 0.834 0.138 33 Y 0.065 0.747 0.188 34 I 0.088 0.702 0.210 35 S 0.057 0.580 0.363 36 A 0.001 0.976 0.023 37 E 0.002 0.968 0.030 38 I 0.003 0.972 0.025 39 M 0.005 0.970 0.025 40 Q 0.010 0.963 0.027 41 L 0.011 0.950 0.038 42 H 0.011 0.904 0.085 43 H 0.007 0.896 0.097 44 Q 0.004 0.913 0.083 45 K 0.006 0.909 0.086 46 H 0.007 0.916 0.077 47 H 0.009 0.928 0.063 48 Q 0.012 0.944 0.044 49 G 0.012 0.948 0.040 50 Y 0.027 0.925 0.048 51 V 0.020 0.922 0.058 52 N 0.009 0.902 0.089 53 G 0.005 0.843 0.152 54 A 0.001 0.956 0.042 55 N 0.001 0.974 0.025 56 A 0.001 0.979 0.021 57 A 0.001 0.981 0.018 58 L 0.001 0.987 0.012 59 E 0.001 0.989 0.010 60 K 0.001 0.988 0.011 61 L 0.001 0.981 0.018 62 E 0.001 0.976 0.024 63 K 0.001 0.958 0.041 64 F 0.003 0.911 0.086 65 R 0.006 0.819 0.175 66 K 0.007 0.638 0.356 67 G 0.004 0.428 0.568 68 E 0.007 0.333 0.660 69 A 0.011 0.515 0.474 70 Q 0.010 0.800 0.189 71 I 0.019 0.845 0.137 72 D 0.023 0.865 0.111 73 I 0.030 0.877 0.093 74 R 0.031 0.886 0.083 75 A 0.032 0.860 0.108 76 V 0.037 0.799 0.164 77 L 0.034 0.721 0.245 78 R 0.023 0.739 0.238 79 D 0.054 0.618 0.328 80 L 0.136 0.412 0.451 81 S 0.296 0.258 0.447 82 F 0.295 0.153 0.552 83 H 0.113 0.030 0.857 84 L 0.133 0.071 0.796 85 N 0.092 0.147 0.761 86 G 0.046 0.624 0.330 87 H 0.033 0.780 0.187 88 I 0.018 0.915 0.067 89 L 0.010 0.939 0.051 90 H 0.006 0.971 0.023 91 S 0.002 0.992 0.007 92 I 0.002 0.991 0.007 93 F 0.002 0.989 0.008 94 W 0.003 0.978 0.019 95 P 0.003 0.960 0.036 96 N 0.004 0.910 0.087 97 M 0.020 0.636 0.343 98 A 0.023 0.275 0.701 99 P 0.022 0.169 0.809 100 P 0.044 0.115 0.841 101 G 0.074 0.076 0.850 102 K 0.035 0.061 0.904 103 G 0.012 0.061 0.927 104 G 0.015 0.053 0.932 105 G 0.049 0.049 0.901 106 K 0.056 0.031 0.912 107 P 0.029 0.039 0.932 108 G 0.023 0.096 0.881 109 G 0.017 0.563 0.420 110 K 0.017 0.776 0.207 111 I 0.004 0.969 0.027 112 A 0.004 0.980 0.016 113 D 0.003 0.986 0.010 114 L 0.004 0.984 0.013 115 I 0.005 0.976 0.019 116 N 0.008 0.946 0.046 117 K 0.005 0.891 0.104 118 F 0.013 0.653 0.334 119 F 0.014 0.433 0.552 120 G 0.011 0.055 0.934 121 S 0.017 0.091 0.891 122 F 0.001 0.943 0.055 123 E 0.001 0.981 0.019 124 K 0.001 0.990 0.009 125 F 0.001 0.990 0.009 126 K 0.002 0.989 0.010 127 E 0.002 0.989 0.009 128 E 0.001 0.986 0.013 129 F 0.003 0.971 0.026 130 S 0.005 0.950 0.046 131 Q 0.002 0.961 0.037 132 A 0.007 0.912 0.081 133 A 0.016 0.879 0.104 134 K 0.036 0.820 0.144 135 N 0.056 0.623 0.321 136 V 0.111 0.155 0.734 137 E 0.144 0.084 0.772 138 G 0.158 0.036 0.806 139 V 0.273 0.019 0.709 140 G 0.456 0.057 0.486 141 W 0.738 0.034 0.227 142 A 0.882 0.031 0.087 143 I 0.900 0.029 0.071 144 L 0.912 0.020 0.068 145 V 0.854 0.012 0.134 146 Y 0.710 0.009 0.281 147 E 0.439 0.014 0.547 148 P 0.113 0.051 0.836 149 L 0.044 0.055 0.901 150 E 0.032 0.041 0.927 151 E 0.077 0.015 0.908 152 Q 0.567 0.005 0.427 153 L 0.888 0.002 0.111 154 L 0.968 0.001 0.031 155 I 0.984 0.002 0.014 156 L 0.966 0.004 0.030 157 Q 0.884 0.004 0.113 158 I 0.610 0.010 0.380 159 E 0.311 0.026 0.663 160 K 0.108 0.042 0.849 161 H 0.051 0.169 0.780 162 N 0.036 0.118 0.845 163 L 0.053 0.176 0.770 164 M 0.078 0.175 0.747 165 H 0.138 0.220 0.642 166 A 0.106 0.236 0.658 167 A 0.045 0.143 0.811 168 D 0.035 0.031 0.935 169 A 0.240 0.018 0.741 170 Q 0.607 0.016 0.376 171 V 0.791 0.018 0.192 172 L 0.871 0.031 0.098 173 L 0.867 0.074 0.059 174 A 0.833 0.093 0.074 175 L 0.610 0.156 0.235 176 D 0.310 0.290 0.399 177 V 0.114 0.565 0.321 178 W 0.040 0.849 0.111 179 E 0.017 0.944 0.040 180 H 0.008 0.969 0.023 181 A 0.007 0.982 0.011 182 Y 0.005 0.985 0.010 183 Y 0.003 0.988 0.009 184 L 0.006 0.980 0.014 185 Q 0.007 0.962 0.031 186 Y 0.005 0.948 0.047 187 K 0.008 0.889 0.103 188 N 0.019 0.707 0.274 189 D 0.019 0.611 0.370 190 R 0.020 0.312 0.668 191 G 0.005 0.793 0.202 192 S 0.005 0.906 0.088 193 Y 0.008 0.945 0.047 194 V 0.009 0.958 0.033 195 D 0.020 0.933 0.048 196 N 0.028 0.885 0.087 197 W 0.054 0.792 0.154 198 W 0.076 0.627 0.297 199 N 0.059 0.547 0.393 200 V 0.157 0.380 0.464 201 V 0.209 0.183 0.608 202 N 0.091 0.073 0.835 203 W 0.003 0.946 0.051 204 D 0.004 0.937 0.059 205 D 0.003 0.959 0.038 206 V 0.004 0.950 0.046 207 E 0.002 0.970 0.028 208 R 0.002 0.979 0.019 209 R 0.002 0.980 0.017 210 L 0.005 0.972 0.023 211 Q 0.004 0.968 0.027 212 K 0.005 0.954 0.042 213 A 0.008 0.907 0.084 214 L 0.012 0.800 0.188 215 N 0.008 0.720 0.271 216 G 0.019 0.507 0.474 217 Q 0.064 0.422 0.515 218 I 0.125 0.413 0.461 219 A 0.116 0.375 0.510 220 L 0.157 0.256 0.587 221 K 0.117 0.142 0.741 222 L 0.032 0.021 0.948