PFRMAT SS
TARGET T0128
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0128-family.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 11.7246
METHOD
MODEL 1
M C 0.726
R C 0.691
G C 0.649
S C 0.586
H C 0.532
H C 0.511
H C 0.469
H H 0.432
H H 0.450
H H 0.453
G H 0.400
S E 0.373
V E 0.389
T E 0.397
T C 0.370
K E 0.395
R E 0.396
Y E 0.499
T C 0.502
L C 0.843
P C 0.896
P C 0.884
L C 0.854
P C 0.889
Y C 0.853
A C 0.900
Y H 0.717
N H 0.717
A H 0.820
L H 0.894
E H 0.853
P H 0.834
Y H 0.747
I H 0.702
S H 0.580
A H 0.976
E H 0.968
I H 0.972
M H 0.970
Q H 0.963
L H 0.950
H H 0.904
H H 0.896
Q H 0.913
K H 0.909
H H 0.916
H H 0.928
Q H 0.944
G H 0.948
Y H 0.925
V H 0.922
N H 0.902
G H 0.843
A H 0.956
N H 0.974
A H 0.979
A H 0.981
L H 0.987
E H 0.989
K H 0.988
L H 0.981
E H 0.976
K H 0.958
F H 0.911
R H 0.819
K H 0.638
G C 0.568
E C 0.660
A H 0.515
Q H 0.800
I H 0.845
D H 0.865
I H 0.877
R H 0.886
A H 0.860
V H 0.799
L H 0.721
R H 0.739
D H 0.618
L C 0.451
S C 0.447
F C 0.552
H C 0.857
L C 0.796
N C 0.761
G H 0.624
H H 0.780
I H 0.915
L H 0.939
H H 0.971
S H 0.992
I H 0.991
F H 0.989
W H 0.978
P H 0.960
N H 0.910
M H 0.636
A C 0.701
P C 0.809
P C 0.841
G C 0.850
K C 0.904
G C 0.927
G C 0.932
G C 0.901
K C 0.912
P C 0.932
G C 0.881
G H 0.563
K H 0.776
I H 0.969
A H 0.980
D H 0.986
L H 0.984
I H 0.976
N H 0.946
K H 0.891
F H 0.653
F C 0.552
G C 0.934
S C 0.891
F H 0.943
E H 0.981
K H 0.990
F H 0.990
K H 0.989
E H 0.989
E H 0.986
F H 0.971
S H 0.950
Q H 0.961
A H 0.912
A H 0.879
K H 0.820
N H 0.623
V C 0.734
E C 0.772
G C 0.806
V C 0.709
G C 0.486
W E 0.738
A E 0.882
I E 0.900
L E 0.912
V E 0.854
Y E 0.710
E C 0.547
P C 0.836
L C 0.901
E C 0.927
E C 0.908
Q E 0.567
L E 0.888
L E 0.968
I E 0.984
L E 0.966
Q E 0.884
I E 0.610
E C 0.663
K C 0.849
H C 0.780
N C 0.845
L C 0.770
M C 0.747
H C 0.642
A C 0.658
A C 0.811
D C 0.935
A C 0.741
Q E 0.607
V E 0.791
L E 0.871
L E 0.867
A E 0.833
L E 0.610
D C 0.399
V H 0.565
W H 0.849
E H 0.944
H H 0.969
A H 0.982
Y H 0.985
Y H 0.988
L H 0.980
Q H 0.962
Y H 0.948
K H 0.889
N H 0.707
D H 0.611
R C 0.668
G H 0.793
S H 0.906
Y H 0.945
V H 0.958
D H 0.933
N H 0.885
W H 0.792
W H 0.627
N H 0.547
V C 0.464
V C 0.608
N C 0.835
W H 0.946
D H 0.937
D H 0.959
V H 0.950
E H 0.970
R H 0.979
R H 0.980
L H 0.972
Q H 0.968
K H 0.954
A H 0.907
L H 0.800
N H 0.720
G H 0.507
Q C 0.515
I C 0.461
A C 0.510
L C 0.587
K C 0.741
L C 0.948
END