PFRMAT SS TARGET T0127 AUTHOR 3670-4530-6947 METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 10 METHOD 7 10 METHOD 5 10 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment T0127.t2k.a2m.gz METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 170.611 METHOD MODEL 1 M C 0.913 T H 0.592 T H 0.615 A H 0.622 V H 0.502 A C 0.493 R C 0.597 L C 0.593 Q C 0.642 P C 0.637 S C 0.687 A C 0.603 S C 0.540 G H 0.664 A H 0.730 K H 0.702 T H 0.611 R C 0.486 P C 0.779 V H 0.520 F H 0.532 P H 0.562 F H 0.533 S H 0.626 A H 0.566 I H 0.522 V C 0.454 G C 0.677 Q H 0.853 E H 0.908 D H 0.947 M H 0.989 K H 0.993 L H 0.997 A H 0.998 L H 0.998 L H 0.997 L H 0.994 T H 0.989 A H 0.969 V H 0.901 D C 0.683 P C 0.936 G C 0.948 I C 0.882 G C 0.797 G C 0.523 V E 0.940 L E 0.981 V E 0.988 F E 0.947 G E 0.595 D C 0.841 R C 0.919 G C 0.847 T C 0.705 G H 0.592 K H 0.834 S H 0.955 T H 0.984 A H 0.990 V H 0.994 R H 0.996 A H 0.992 L H 0.980 A H 0.962 A H 0.899 L H 0.754 L C 0.599 P C 0.930 E C 0.805 I C 0.689 E C 0.516 A E 0.374 V E 0.378 E E 0.378 G E 0.409 C E 0.437 P C 0.391 V C 0.463 S C 0.531 S C 0.586 P C 0.660 N C 0.676 V C 0.675 E C 0.636 M C 0.640 I C 0.628 P C 0.622 D C 0.613 W C 0.653 A C 0.592 T C 0.536 V C 0.558 L C 0.581 S C 0.706 T C 0.748 N C 0.722 V C 0.543 I C 0.458 R C 0.416 K C 0.487 P C 0.592 T C 0.690 P C 0.814 V C 0.504 V C 0.496 D C 0.524 L C 0.700 P C 0.804 L C 0.720 G C 0.615 V C 0.485 S H 0.445 E H 0.493 D H 0.499 R H 0.482 V H 0.394 V C 0.422 G C 0.588 A C 0.626 L C 0.702 D C 0.523 I C 0.342 E C 0.396 R H 0.414 A C 0.477 I C 0.532 S C 0.653 K C 0.771 G C 0.878 E C 0.687 K C 0.501 A E 0.509 F E 0.449 E C 0.580 P C 0.643 G C 0.644 L C 0.445 L H 0.412 A H 0.524 R H 0.537 A C 0.495 N C 0.745 R C 0.943 G C 0.887 Y E 0.912 L E 0.985 Y E 0.989 I E 0.943 D E 0.568 E C 0.829 C C 0.820 N C 0.786 L C 0.817 L C 0.887 E C 0.956 D H 0.962 H H 0.983 I H 0.993 V H 0.990 D H 0.995 L H 0.995 L H 0.992 L H 0.988 D H 0.980 V H 0.964 A H 0.899 Q H 0.818 S H 0.510 G C 0.972 E C 0.777 N E 0.699 V E 0.808 V E 0.916 E E 0.825 R E 0.672 D C 0.756 G C 0.928 L E 0.513 S E 0.725 I E 0.722 R E 0.617 H C 0.564 P C 0.653 A C 0.725 R C 0.648 F E 0.880 V E 0.974 L E 0.994 V E 0.995 G E 0.965 S E 0.783 G C 0.673 N C 0.918 P C 0.868 E C 0.830 E C 0.748 G C 0.845 D C 0.903 L C 0.935 R C 0.954 P H 0.892 Q H 0.910 L H 0.937 L H 0.864 D H 0.831 R H 0.725 F C 0.708 G C 0.698 L E 0.537 S E 0.735 V E 0.805 E E 0.728 V C 0.494 L C 0.771 S C 0.897 P C 0.908 R C 0.880 D H 0.618 V H 0.825 E H 0.920 T H 0.943 R H 0.964 V H 0.974 E H 0.980 V H 0.979 I H 0.979 R H 0.980 R H 0.969 R H 0.962 D H 0.947 T H 0.916 Y H 0.822 D H 0.734 A H 0.594 D C 0.634 P C 0.670 K C 0.590 A C 0.494 F H 0.488 L H 0.530 E H 0.587 E H 0.660 W H 0.663 R H 0.636 P H 0.670 K H 0.689 D H 0.820 M H 0.881 D H 0.926 I H 0.956 R H 0.979 N H 0.990 Q H 0.992 I H 0.993 L H 0.993 E H 0.992 A H 0.983 R H 0.963 E H 0.918 R H 0.843 L H 0.625 P H 0.512 K C 0.797 V C 0.845 E C 0.819 A C 0.848 P C 0.924 N H 0.950 T H 0.974 A H 0.988 L H 0.987 Y H 0.992 D H 0.993 C H 0.992 A H 0.991 A H 0.989 L H 0.974 C H 0.958 I H 0.930 A H 0.865 L H 0.637 G C 0.857 S C 0.959 D C 0.956 G C 0.958 L H 0.898 R H 0.951 G H 0.976 E H 0.966 L H 0.981 T H 0.983 L H 0.987 L H 0.988 R H 0.989 S H 0.991 A H 0.991 R H 0.993 A H 0.992 L H 0.990 A H 0.984 A H 0.975 L H 0.953 E H 0.798 G C 0.939 A C 0.941 T C 0.863 A C 0.659 V C 0.506 G C 0.728 R H 0.941 D H 0.953 H H 0.960 L H 0.985 K H 0.989 R H 0.990 V H 0.984 A H 0.975 T H 0.967 M H 0.935 A H 0.899 L H 0.856 S H 0.795 H H 0.751 R H 0.718 L H 0.657 R H 0.536 R C 0.614 D C 0.857 P H 0.522 L H 0.627 D H 0.653 E H 0.513 A C 0.504 G C 0.592 S C 0.545 T H 0.558 A H 0.711 R H 0.829 V H 0.915 A H 0.971 R H 0.990 T H 0.988 V H 0.985 E H 0.979 E H 0.956 T H 0.882 L H 0.593 P C 0.980 END