;  SAM: prettyalign v3.2 (July 31, 2000) compiled 07/31/00_16:52:38
;  (c) 1992-1999 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
; Sequences correspond to the following labels:
; 1 T0126
; 2 gi|6981304|ref|NP_036748.1|_1:163
; 3 gi|6754936|ref|NP_035140.1|_1:163
; 4 gi|92567|pir||A27450_2:162
; 5 gi|5453828|ref|NP_006180.1|_1:163
; 6 gi|627558|pir||A54261_1:163
; 7 gi|3582107|emb|CAA09447.1|_3:156
; 8 gi|3582105|emb|CAA09446.1|_4:156
              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MAEDGPQKQQLEMPLVLDQDLTQQMRLRVESLKQRGEKKQDGEKLIRPAESVYRLDFIQQQKLQF
   2 MAEDGPQKQQLDMPLVLDQDLTKQMRLRVESLKQRGEKKQDGEKLLRPAESVYRLDFIQQQKLQF
   3 MAEDGPQKQQLEMPLVLDQDLTQQMRLRVESLKQRGEKKQDGEKLIRPAESVYRLDFIQQQKLQF
   4 --EDGPQKQQLDMPLVLDQDLTKQMRLRVESLKQRGEKKQDGEKLLRPAESVYRLDFIQQQKLQF
   5 MAEDRPQQPQLDMPLVLDQGLTRQMRLRVESLKQRGEKRQDGEKLLQPAESVYRLNFTQQQRLQF
   6 MAEDRPQQPQLDMPLVLDQGLTRQMRLRVERLKQRGEKRQDGEKLLQPEESVYRLNFTQQQRLQF
   7 -----PETSEMELPFNEDTQLTKCMRIRVQTLQQKNGKPQEGEMLLRANDYIYRLDF-PKQKLRF
   8 ------ETSEMELPFIEDTQLTKCMRIRVQTLQQKNAKPQEGEMLLRANEYIYRVDF-SKQKLRF


         70        80        90       100       110       120       130
         |         |         |         |         |         |         |
   1 DHWNVVLDKPGKVTITGTSQNWTPDLTNLMTRQLLDPAAIFWRKEDSDAMDWNEADALEFGERLS
   2 DHWNVVLDKPGKVTITGTSQNWTPDLTNLMTRQLLDPAAIFWRKEDSDAMDWNEADALEFGERLS
   3 DHWNVVLDKPGKVTITGTSQNWTPDLTNLMTRQLLDPAAIFWRKEDSDAMDWNEADALEFGERLS
   4 DHWNVVLDKPGKVTITGTSQNWTPDLTNLMTRQLLDPAAIFWRKEDSDAMDWNEADALEFGERLS
   5 ERWNVVLDKPGKVTITGTSQNWTPDLTNLMTRQLLDPTAIFWRKEDSDAIDWNEADALEFGERLS
   6 ERWNVVLDKPGKVTITGTSQNWTPDLTNLMTRQLLDPTAIFWRKEDSDAIDWNEADALEFGERLS
   7 LWWKVHLKTPGKVMITGTSQHWTPDLTNLMTRQLLEPSAVFYKKDAKDKVECNEADAQEFGERIA
   8 LWWKVHLKSPGKVMITGTSQHWTPDLTNLMTRQLLEPSAVFYKKDANDEVECNEADAQEFGERIA


             140       150       160   
              |         |         |   
   1 DLAKIRKVMYFLITFGEGVEPANLKASVVFNQL
   2 DLAKIRKVMYFLITFGEGVEPANLKASVVFNQL
   3 DLAKIRKVMYFLITFGEGVEPANLKASVVFNQL
   4 DLAKIRKVMYFLITFGEGVEPANLKASVVFNQL
   5 DLAKIRKVMYFLVTFGEGVEPANLKASVVFNQL
   6 DLAKIRKVMYFLVTFGEGVEPANLKASVVFNQL
   7 ELAKIRKVMYFVFTFLDGADPSTVEYSIGF---
   8 ELAKIRKVMYFVITFLDGADPATIECSIGF---