PFRMAT SS
TARGET T0126
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0126.remoter-t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 9.87474
METHOD
MODEL 1
M C 0.537
A C 0.645
E C 0.632
D C 0.666
G C 0.776
P C 0.736
Q C 0.603
K C 0.533
Q C 0.476
Q H 0.424
L H 0.443
E C 0.396
M C 0.702
P C 0.651
L C 0.486
V H 0.531
L H 0.633
D H 0.681
Q H 0.666
D H 0.664
L H 0.898
T H 0.884
Q H 0.947
Q H 0.971
M H 0.980
R H 0.987
L H 0.986
R H 0.985
V H 0.983
E H 0.975
S H 0.967
L H 0.922
K H 0.891
Q H 0.868
R H 0.786
G H 0.633
E H 0.752
K H 0.842
K H 0.854
Q H 0.908
D H 0.903
G H 0.884
E H 0.899
K H 0.872
L H 0.858
I H 0.693
R H 0.525
P H 0.521
A C 0.491
E C 0.531
S H 0.457
V H 0.497
Y H 0.467
R H 0.580
L H 0.564
D H 0.563
F H 0.747
I H 0.736
Q H 0.821
Q H 0.797
Q H 0.761
K H 0.769
L H 0.735
Q H 0.664
F H 0.579
D H 0.483
H C 0.447
W C 0.474
N E 0.552
V E 0.705
V E 0.736
L E 0.674
D C 0.502
K C 0.788
P C 0.852
G C 0.775
K E 0.556
V E 0.760
T E 0.774
I E 0.717
T E 0.508
G C 0.636
T C 0.688
S C 0.698
Q C 0.764
N C 0.777
W C 0.802
T C 0.896
P C 0.523
D H 0.529
L H 0.706
T H 0.600
N H 0.693
L H 0.692
M H 0.500
T H 0.506
R H 0.628
Q H 0.561
L C 0.513
L C 0.735
D C 0.940
P C 0.933
A C 0.910
A C 0.549
I E 0.775
F E 0.888
W E 0.800
R E 0.583
K C 0.601
E C 0.731
D C 0.634
S C 0.603
D C 0.501
A H 0.543
M H 0.482
D H 0.472
W H 0.564
N H 0.483
E H 0.456
A H 0.460
D C 0.682
A C 0.716
L C 0.640
E C 0.563
F H 0.619
G H 0.764
E H 0.890
R H 0.903
L H 0.977
S H 0.982
D H 0.989
L H 0.987
A H 0.992
K H 0.992
I H 0.986
R H 0.981
K H 0.965
V H 0.927
M H 0.775
Y H 0.576
F E 0.513
L E 0.834
I E 0.830
T E 0.769
F E 0.523
G C 0.841
E C 0.919
G C 0.941
V C 0.880
E C 0.924
P C 0.689
A C 0.599
N C 0.457
L E 0.565
K E 0.742
A E 0.784
S E 0.769
V E 0.762
V E 0.674
F E 0.479
N C 0.529
Q C 0.701
L C 0.937
END