PFRMAT SS TARGET T0126 AUTHOR 3670-4530-6947 METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 10 METHOD 7 10 METHOD 5 10 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment T0126.remote-t2k.a2m.gz METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 2.66687 METHOD MODEL 1 M C 0.776 A C 0.688 E C 0.692 D C 0.724 G C 0.890 P C 0.835 Q C 0.791 K C 0.744 Q C 0.660 Q C 0.498 L C 0.464 E C 0.528 M C 0.707 P C 0.677 L E 0.549 V E 0.577 L C 0.530 D C 0.716 Q C 0.766 D C 0.750 L C 0.581 T C 0.542 Q C 0.431 Q C 0.424 M H 0.386 R H 0.395 L H 0.437 R H 0.457 V H 0.668 E H 0.702 S H 0.765 L H 0.799 K H 0.828 Q H 0.817 R H 0.624 G C 0.826 E C 0.820 K C 0.690 K C 0.607 Q C 0.609 D C 0.773 G C 0.604 E C 0.421 K C 0.385 L E 0.410 I C 0.526 R C 0.775 P C 0.795 A C 0.775 E C 0.573 S E 0.634 V E 0.820 Y E 0.837 R E 0.782 L E 0.701 D E 0.549 F C 0.478 I C 0.514 Q H 0.416 Q H 0.408 Q C 0.374 K C 0.367 L E 0.444 Q E 0.576 F E 0.580 D E 0.584 H E 0.684 W E 0.790 N E 0.892 V E 0.942 V E 0.942 L E 0.911 D E 0.670 K C 0.659 P C 0.829 G C 0.696 K E 0.740 V E 0.897 T E 0.919 I E 0.871 T E 0.600 G C 0.581 T C 0.651 S C 0.701 Q C 0.843 N C 0.891 W C 0.794 T C 0.832 P C 0.797 D C 0.861 L H 0.736 T H 0.742 N H 0.817 L H 0.812 M H 0.777 T H 0.752 R H 0.844 Q H 0.791 L H 0.684 L C 0.639 D C 0.908 P C 0.816 A C 0.736 A E 0.568 I E 0.820 F E 0.909 W E 0.808 R E 0.484 K C 0.748 E C 0.882 D C 0.714 S C 0.704 D C 0.702 A C 0.685 M C 0.635 D C 0.706 W H 0.484 N C 0.558 E H 0.882 A H 0.871 D H 0.896 A H 0.912 L H 0.922 E H 0.929 F H 0.902 G H 0.761 E H 0.898 R H 0.898 L H 0.976 S H 0.981 D H 0.989 L H 0.986 A H 0.992 K H 0.991 I H 0.986 R H 0.980 K H 0.961 V H 0.922 M H 0.768 Y H 0.560 F E 0.530 L E 0.836 I E 0.833 T E 0.769 F E 0.521 G C 0.841 E C 0.918 G C 0.941 V C 0.880 E C 0.924 P C 0.688 A C 0.598 N C 0.457 L E 0.561 K E 0.738 A E 0.779 S E 0.765 V E 0.762 V E 0.679 F E 0.487 N C 0.524 Q C 0.699 L C 0.937 END