;  SAM: prettyalign v3.2 (July 31, 2000) compiled 07/31/00_16:52:38
;  (c) 1992-1999 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
; Sequences correspond to the following labels:
; 1 T0125
; 2 gi|604529|gb|AAC37232.1|_18:158
; 3 gi|604531|gb|AAC37233.1|_26:165
; 4 gi|604527|gb|AAC37230.1|_21:148
; 5 gi|604525|gb|AAC37229.1|_22:148
; 6 gi|604533|gb|AAC37231.1|_22:148
              10        20        30         40        50        60    
              |         |         |          |         |         |    
   1 FDDVVVSRQEQSYVQRGMVNFLDEEMHKLVKRF.RDMRWNLGPGFVFLLKKVNRERMMRYCMDYA
   2 FDDVVVSRQEQSYVQRGMVNFLDEEMHKLVKRF.RDMRWNLGPGFVFLLKKVNRERMMRYCMDYA
   3 WGKIVVKEKNKAAMKIGFMEYLDAKLVKFKRHWlVGANWKLQKFETDEMRYLAIKRLIKVCHGYT
   4 ---TTVSKENAAAMKIAMIKFLDARAGKFKKRV.ENMGYPITPPQWTTLLYYNRQRLMEWCHTYV
   5 ----TVSKENAAAMKVAMIKFLDSRTDRFKKRI.EKIGYPITPPQYTTLLYYNRERLMDWCHNYV
   6 ----SVSKENEAAMKVAMMKFLDMKAGVFKEII.EDMGYPITPPQWTTLLYYNRERLIEFCRSFL


          70        80        90       100       110       120       13
          |         |         |         |         |         |         
   1 RYSKKILQLKHLPVNKKTLTKMGRFVGYRNYGVIRELYADVFRDVQGFRGPKMTAAMRKYSSKDP
   2 RYSKKILQLKHLPVNKKTLTKMGRFVGYRNYGVIRELYADVFRDVQGFRGPKMTAAMRKYSSKDP
   3 IWSQRLIMLKYRPLNEKYFKKVGRYLAWRNYLIVFRMWIGVLK--KNLKRSEITKPMQKLLDTKD
   4 EFSKKIILMGGNKLNKKNFTRMGRIIGWKNQWVLKRRQWEMVR---VMRRYKSTAIAKKIVAMKV
   5 EVSKKIILLGGNKLNKKNFARMGRIIGWKNQWILKRRQWHMVR---VMRRYKASAIAKKIVAMKV
   6 ALSKKIILLGGNKLNKANFARMGRILGWKSQWAVRQRQWGMVR---VSRRHTSTAIAKRIVAMKV


      0       140 
     |         | 
   1 GTFPCKNEKRRG
   2 GTFPCKNEKRRG
   3 GELPCPVRKIHG
   4 ADLPC-------
   5 ADLPC-------
   6 ADLPC-------