# TARGET T0125 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0125.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 5.01575 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 F 0.264 0.037 0.699 2 D 0.178 0.026 0.796 3 D 0.371 0.018 0.611 4 V 0.702 0.018 0.280 5 V 0.830 0.018 0.152 6 V 0.860 0.021 0.119 7 S 0.603 0.034 0.363 8 R 0.171 0.264 0.565 9 Q 0.026 0.491 0.483 10 E 0.009 0.732 0.260 11 Q 0.003 0.945 0.052 12 S 0.003 0.971 0.025 13 Y 0.003 0.984 0.013 14 V 0.002 0.990 0.009 15 Q 0.002 0.991 0.007 16 R 0.001 0.994 0.005 17 G 0.002 0.991 0.006 18 M 0.003 0.989 0.008 19 V 0.005 0.984 0.011 20 N 0.008 0.971 0.021 21 F 0.009 0.950 0.041 22 L 0.010 0.892 0.098 23 D 0.007 0.842 0.151 24 E 0.002 0.920 0.078 25 E 0.002 0.920 0.078 26 M 0.005 0.913 0.082 27 H 0.008 0.932 0.060 28 K 0.017 0.942 0.041 29 L 0.021 0.949 0.030 30 V 0.015 0.963 0.022 31 K 0.031 0.929 0.040 32 R 0.042 0.885 0.072 33 F 0.042 0.856 0.102 34 R 0.028 0.803 0.169 35 D 0.024 0.717 0.259 36 M 0.042 0.405 0.553 37 R 0.021 0.035 0.944 38 W 0.072 0.009 0.919 39 N 0.200 0.012 0.788 40 L 0.154 0.017 0.829 41 G 0.063 0.018 0.919 42 P 0.035 0.070 0.895 43 G 0.052 0.105 0.843 44 F 0.135 0.229 0.635 45 V 0.219 0.315 0.466 46 F 0.329 0.384 0.287 47 L 0.374 0.436 0.190 48 L 0.295 0.577 0.128 49 K 0.252 0.621 0.127 50 K 0.134 0.732 0.133 51 V 0.086 0.741 0.172 52 N 0.029 0.804 0.167 53 R 0.004 0.953 0.043 54 E 0.002 0.982 0.017 55 R 0.001 0.988 0.011 56 M 0.002 0.986 0.012 57 M 0.002 0.989 0.009 58 R 0.003 0.978 0.019 59 Y 0.003 0.971 0.026 60 C 0.007 0.921 0.072 61 M 0.006 0.873 0.121 62 D 0.004 0.887 0.109 63 Y 0.018 0.888 0.093 64 A 0.041 0.887 0.072 65 R 0.105 0.820 0.076 66 Y 0.067 0.877 0.057 67 S 0.063 0.846 0.091 68 K 0.080 0.845 0.076 69 K 0.080 0.845 0.075 70 I 0.185 0.776 0.039 71 L 0.126 0.836 0.039 72 Q 0.112 0.811 0.077 73 L 0.058 0.827 0.116 74 K 0.030 0.332 0.639 75 H 0.019 0.122 0.860 76 L 0.033 0.172 0.795 77 P 0.060 0.206 0.734 78 V 0.069 0.291 0.640 79 N 0.044 0.322 0.634 80 K 0.003 0.937 0.061 81 K 0.002 0.955 0.043 82 T 0.004 0.955 0.041 83 L 0.004 0.968 0.028 84 T 0.004 0.968 0.028 85 K 0.003 0.963 0.034 86 M 0.008 0.927 0.065 87 G 0.031 0.737 0.232 88 R 0.088 0.684 0.228 89 F 0.194 0.640 0.166 90 V 0.265 0.568 0.167 91 G 0.295 0.475 0.230 92 Y 0.287 0.413 0.300 93 R 0.212 0.465 0.323 94 N 0.126 0.606 0.268 95 Y 0.180 0.666 0.154 96 G 0.236 0.664 0.100 97 V 0.221 0.734 0.045 98 I 0.149 0.822 0.030 99 R 0.063 0.910 0.027 100 E 0.019 0.958 0.022 101 L 0.009 0.968 0.023 102 Y 0.014 0.938 0.048 103 A 0.014 0.914 0.071 104 D 0.011 0.893 0.096 105 V 0.026 0.810 0.163 106 F 0.025 0.770 0.205 107 R 0.033 0.550 0.418 108 D 0.013 0.801 0.186 109 V 0.016 0.807 0.176 110 Q 0.023 0.755 0.222 111 G 0.028 0.609 0.363 112 F 0.037 0.275 0.688 113 R 0.033 0.301 0.666 114 G 0.028 0.258 0.713 115 P 0.057 0.283 0.660 116 K 0.069 0.455 0.476 117 M 0.053 0.627 0.320 118 T 0.026 0.763 0.210 119 A 0.009 0.930 0.061 120 A 0.010 0.938 0.052 121 M 0.012 0.952 0.036 122 R 0.012 0.960 0.028 123 K 0.019 0.939 0.042 124 Y 0.029 0.904 0.067 125 S 0.042 0.773 0.184 126 S 0.053 0.488 0.459 127 K 0.037 0.321 0.642 128 D 0.060 0.072 0.868 129 P 0.065 0.138 0.797 130 G 0.097 0.110 0.793 131 T 0.129 0.071 0.800 132 F 0.128 0.033 0.839 133 P 0.166 0.035 0.799 134 C 0.076 0.025 0.899 135 K 0.065 0.159 0.776 136 N 0.080 0.249 0.671 137 E 0.146 0.344 0.510 138 K 0.099 0.330 0.571 139 R 0.135 0.292 0.572 140 R 0.089 0.151 0.761 141 G 0.018 0.007 0.975