PFRMAT SS
TARGET T0125
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0125.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 5.01575
METHOD
MODEL 1
F C 0.699
D C 0.796
D C 0.611
V E 0.702
V E 0.830
V E 0.860
S E 0.603
R C 0.565
Q H 0.491
E H 0.732
Q H 0.945
S H 0.971
Y H 0.984
V H 0.990
Q H 0.991
R H 0.994
G H 0.991
M H 0.989
V H 0.984
N H 0.971
F H 0.950
L H 0.892
D H 0.842
E H 0.920
E H 0.920
M H 0.913
H H 0.932
K H 0.942
L H 0.949
V H 0.963
K H 0.929
R H 0.885
F H 0.856
R H 0.803
D H 0.717
M C 0.553
R C 0.944
W C 0.919
N C 0.788
L C 0.829
G C 0.919
P C 0.895
G C 0.843
F C 0.635
V C 0.466
F H 0.384
L H 0.436
L H 0.577
K H 0.621
K H 0.732
V H 0.741
N H 0.804
R H 0.953
E H 0.982
R H 0.988
M H 0.986
M H 0.989
R H 0.978
Y H 0.971
C H 0.921
M H 0.873
D H 0.887
Y H 0.888
A H 0.887
R H 0.820
Y H 0.877
S H 0.846
K H 0.845
K H 0.845
I H 0.776
L H 0.836
Q H 0.811
L H 0.827
K C 0.639
H C 0.860
L C 0.795
P C 0.734
V C 0.640
N C 0.634
K H 0.937
K H 0.955
T H 0.955
L H 0.968
T H 0.968
K H 0.963
M H 0.927
G H 0.737
R H 0.684
F H 0.640
V H 0.568
G H 0.475
Y H 0.413
R H 0.465
N H 0.606
Y H 0.666
G H 0.664
V H 0.734
I H 0.822
R H 0.910
E H 0.958
L H 0.968
Y H 0.938
A H 0.914
D H 0.893
V H 0.810
F H 0.770
R H 0.550
D H 0.801
V H 0.807
Q H 0.755
G H 0.609
F C 0.688
R C 0.666
G C 0.713
P C 0.660
K C 0.476
M H 0.627
T H 0.763
A H 0.930
A H 0.938
M H 0.952
R H 0.960
K H 0.939
Y H 0.904
S H 0.773
S H 0.488
K C 0.642
D C 0.868
P C 0.797
G C 0.793
T C 0.800
F C 0.839
P C 0.799
C C 0.899
K C 0.776
N C 0.671
E C 0.510
K C 0.571
R C 0.572
R C 0.761
G C 0.975
END