# command:# Prefix for input files set to /projects/kestrel/users/karplus/burial/undertaker/spots/ # command:# ReadVDW initial.radii # command:Reading spots from dunbrack-925-wet-6.5.spot. Read prototypes from /projects/kestrel/users/karplus/burial/undertaker/spots/../normalize_prototypes/prototypes # command:# reading histogram from smoothed-dunbrack-925-wet-6.5.hist # command:Reading spots from dunbrack-925-dry-6.5.spot. Read prototypes from /projects/kestrel/users/karplus/burial/undertaker/spots/../normalize_prototypes/prototypes # command:# reading histogram from smoothed-dunbrack-925-dry-6.5.hist # command:Setting costs from histograms # command:# Prefix for input files set to /projects/kestrel/users/karplus/burial/undertaker/atoms-inputs/ # command:# reading dunbrack-925.atoms.gz # After reading dunbrack-925.atoms.gz have 925 chains in training database # command:# fragment library contains # type length num_fragments num_indexes_used # n-terminus 1 849 20 (100%) # n-terminus 2 842 253 (63.25%) # middle 1 205367 20 (100%) # middle 2 203845 400 (100%) # middle 3 202366 7929 (99.1125%) # middle 4 200913 88584 (55.365%) # c-terminus 1 862 20 (100%) # c-terminus 2 216 148 (37%) # ss-bonds 650 # command:# Reading rotamer library from dunbrack-925.rot # command:# Score parameters set to # sidechain_weight 5 # clash_penalty 10 nats/clash # ss_bond_bonus 10 # known_ss_bond_bonus 10 # chain_break_penalty 50 nats/Angstrom # wet_spot_weight 1 # dry_spot_weight 5 # command:# Setting InsertAlignment to 5 # InitMethodProbs set to # InsertFragment 0.1 # ReduceClash 0.1 # CrossOver 0.01 # CrossAndInsert 0.2 # TwoFragment 0.15 # InsertSSBond 0.05 # OneRotamer 0 # ClashingRotamer 0.05 # InsertAlignment 5 # ReduceBreak 0.2 # command:# Prefix for input files set to # command:Created new target T0124 from ../T0124.seq # command:# naming current conformation t124-rand # command:# Will now start reporting scores to t124-6.5w-12d.rdb # command:# created fragments for T0124 from T0124-119l.85.3.index # command:# created fragments for T0124 from T0124-119l.86.2.index # command:# created fragments for T0124 from T0124-119l.87.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-119l # command:# created fragments for T0124 from T0124-119l.88.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-119l # command:# command:# created fragments for T0124 from T0124-1a34A.19.3.index # command:# created fragments for T0124 from T0124-1a34A.20.3.index # command:# created fragments for T0124 from T0124-1a44.44.3.index # command:# created fragments for T0124 from T0124-1a44.45.3.index # command:# created fragments for T0124 from T0124-1a7cA.43.3.index # command:# created fragments for T0124 from T0124-1a7cA.44.2.index # command:# created fragments for T0124 from T0124-1a7cA.46.5.index # command:# created fragments for T0124 from T0124-1a8i.64.4.index # command:# created fragments for T0124 from T0124-1a8i.65.5.index # command:# created fragments for T0124 from T0124-1a8i.66.0.index # command:# created fragments for T0124 from T0124-1a8i.67.0.index # command:# created fragments for T0124 from T0124-1a8i.67.3.index # command:# created fragments for T0124 from T0124-1a8i.68.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1a8i # command:# created fragments for T0124 from T0124-1a8i.69.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1a8i # command:# command:# created fragments for T0124 from T0124-1a8i.69.2.index # command:# created fragments for T0124 from T0124-1a8i.70.3.index # command:# created fragments for T0124 from T0124-1a8i.72.2.index # command:# created fragments for T0124 from T0124-1a8i.73.2.index # command:# created fragments for T0124 from T0124-1a8i.74.3.index # command:# created fragments for T0124 from T0124-1a8l.10.0.index # command:# created fragments for T0124 from T0124-1a8l.11.0.index # command:# created fragments for T0124 from T0124-1a8l.12.0.index # command:# created fragments for T0124 from T0124-1a8l.12.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1a8l # command:# created fragments for T0124 from T0124-1a8l.13.0.index # command:# created fragments for T0124 from T0124-1a8l.13.2.index # command:# created fragments for T0124 from T0124-1a8l.16.0.index # command:# created fragments for T0124 from T0124-1a8l.16.4.index # command:# created fragments for T0124 from T0124-1a8l.17.5.index # command:# created fragments for T0124 from T0124-1a8l.19.0.index # command:# created fragments for T0124 from T0124-1a8l.20.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1a8l # command:# created fragments for T0124 from T0124-1a8l.21.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1a8l # command:# created fragments for T0124 from T0124-1a8l.22.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1a8l # command:# created fragments for T0124 from T0124-1a8l.23.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1a8l # command:# created fragments for T0124 from T0124-1a8l.24.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1a8l # command:# created fragments for T0124 from T0124-1a8l.25.3.index # command:# created fragments for T0124 from T0124-1a8l.9.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1a8l # command:# command:# created fragments for T0124 from T0124-1a9xA.102.5.index # command:# created fragments for T0124 from T0124-1adoA.127.3.index # command:# created fragments for T0124 from T0124-1adoA.128.3.index # command:# created fragments for T0124 from T0124-1adoA.129.2.index # command:# created fragments for T0124 from T0124-1adoA.130.4.index # command:# created fragments for T0124 from T0124-1adoA.131.3.index # command:# created fragments for T0124 from T0124-1adoA.212.4.index # command:# created fragments for T0124 from T0124-1adoA.213.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1adoA # command:# command:# created fragments for T0124 from T0124-1adoA.214.2.index # command:# created fragments for T0124 from T0124-1adoA.215.3.index # command:# created fragments for T0124 from T0124-1adoA.216.4.index # command:# created fragments for T0124 from T0124-1ads.222.5.index # command:# created fragments for T0124 from T0124-1af7.13.5.index # command:# created fragments for T0124 from T0124-1af7.16.5.index # command:# created fragments for T0124 from T0124-1af7.6.4.index # command:# created fragments for T0124 from T0124-1af7.8.4.index # command:# created fragments for T0124 from T0124-1af7.9.3.index # command:# created fragments for T0124 from T0124-1afwA.134.3.index # command:# created fragments for T0124 from T0124-1amp.4.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1amp # command:# created fragments for T0124 from T0124-1amp.5.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1amp # command:# created fragments for T0124 from T0124-1amp.6.0.index # command:# created fragments for T0124 from T0124-1amp.7.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1amp # command:# command:# created fragments for T0124 from T0124-1amp.8.5.index # command:# created fragments for T0124 from T0124-1aocA.166.4.index # command:# created fragments for T0124 from T0124-1aocA.167.3.index # command:# created fragments for T0124 from T0124-1aoeA.52.5.index # command:# created fragments for T0124 from T0124-1aq0A.135.4.index # command:# created fragments for T0124 from T0124-1aq0A.136.4.index # command:# created fragments for T0124 from T0124-1aq0A.138.4.index # command:# created fragments for T0124 from T0124-1aq0A.138.5.index # command:# created fragments for T0124 from T0124-1aq0A.140.4.index # command:# created fragments for T0124 from T0124-1aq0A.141.4.index # command:# created fragments for T0124 from T0124-1atzA.10.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1atzA # command:# command:# created fragments for T0124 from T0124-1atzA.7.5.index # command:# created fragments for T0124 from T0124-1atzA.8.0.index # command:# created fragments for T0124 from T0124-1atzA.9.0.index # command:# created fragments for T0124 from T0124-1axn.0.4.index # command:# created fragments for T0124 from T0124-1b0b.52.3.index # command:# created fragments for T0124 from T0124-1b0uA.133.2.index # command:# created fragments for T0124 from T0124-1b0uA.134.2.index # command:# created fragments for T0124 from T0124-1b0uA.136.5.index # command:# created fragments for T0124 from T0124-1b0uA.147.0.index # command:# created fragments for T0124 from T0124-1b0uA.149.3.index # command:# created fragments for T0124 from T0124-1b0uA.150.2.index # command:# created fragments for T0124 from T0124-1b0uA.151.3.index # command:# created fragments for T0124 from T0124-1b0uA.94.3.index # command:# created fragments for T0124 from T0124-1b0uA.95.2.index # command:# created fragments for T0124 from T0124-1b0uA.96.5.index # command:# created fragments for T0124 from T0124-1b0uA.97.5.index # command:# created fragments for T0124 from T0124-1b0uA.98.5.index # command:# created fragments for T0124 from T0124-1b5qA.192.2.index # command:# created fragments for T0124 from T0124-1b5qA.192.4.index # command:# created fragments for T0124 from T0124-1b5qA.193.3.index # command:# created fragments for T0124 from T0124-1b5qA.194.5.index # command:# created fragments for T0124 from T0124-1b5qA.196.3.index # command:# created fragments for T0124 from T0124-1b6a.23.5.index # command:# created fragments for T0124 from T0124-1b6a.24.4.index # command:# created fragments for T0124 from T0124-1b6a.24.5.index # command:# created fragments for T0124 from T0124-1b6a.25.2.index # command:# created fragments for T0124 from T0124-1b6a.26.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1b6a # command:# created fragments for T0124 from T0124-1b6a.27.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1b6a # command:# command:# created fragments for T0124 from T0124-1b6a.28.5.index # command:# created fragments for T0124 from T0124-1b71A.229.5.index # command:# created fragments for T0124 from T0124-1b8aA.115.3.index # command:# created fragments for T0124 from T0124-1b8aA.118.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1b8aA # command:# created fragments for T0124 from T0124-1b8aA.119.5.index # command:# created fragments for T0124 from T0124-1b8aA.121.3.index # command:# created fragments for T0124 from T0124-1b8aA.122.5.index # command:# created fragments for T0124 from T0124-1b8aA.123.5.index # command:# created fragments for T0124 from T0124-1b8aA.185.4.index # command:# created fragments for T0124 from T0124-1b8aA.186.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1b8aA # command:# created fragments for T0124 from T0124-1b8aA.187.0.index # command:# created fragments for T0124 from T0124-1b8aA.188.3.index # command:# created fragments for T0124 from T0124-1b8aA.189.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1b8aA # command:# command:# created fragments for T0124 from T0124-1b8aA.190.4.index # command:# created fragments for T0124 from T0124-1b8aA.191.3.index # command:# created fragments for T0124 from T0124-1b8jA.148.3.index # command:# created fragments for T0124 from T0124-1b8jA.149.5.index # command:# created fragments for T0124 from T0124-1b8jA.150.5.index # command:# created fragments for T0124 from T0124-1b8jA.151.4.index # command:# created fragments for T0124 from T0124-1b8jA.152.3.index # command:# created fragments for T0124 from T0124-1b8jA.153.4.index # command:# created fragments for T0124 from T0124-1b8jA.154.4.index # command:# created fragments for T0124 from T0124-1b8jA.155.2.index # command:# created fragments for T0124 from T0124-1b8jA.155.4.index # command:# created fragments for T0124 from T0124-1b8jA.155.5.index # command:# created fragments for T0124 from T0124-1b8jA.156.2.index # command:# created fragments for T0124 from T0124-1b8jA.157.3.index # command:# created fragments for T0124 from T0124-1b8jA.158.4.index # command:# created fragments for T0124 from T0124-1b8jA.159.2.index # command:# created fragments for T0124 from T0124-1b8jA.160.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1b8jA # command:# created fragments for T0124 from T0124-1b8jA.161.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1b8jA # command:# created fragments for T0124 from T0124-1b8jA.162.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1b8jA # command:# created fragments for T0124 from T0124-1b8jA.165.4.index # command:# created fragments for T0124 from T0124-1b8jA.186.4.index # command:# created fragments for T0124 from T0124-1b8jA.187.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1b8jA # command:# command:# created fragments for T0124 from T0124-1b8jA.188.4.index # command:# created fragments for T0124 from T0124-1b9oA.60.5.index # command:# created fragments for T0124 from T0124-1be9A.6.2.index # command:# created fragments for T0124 from T0124-1bi5A.230.5.index # command:# created fragments for T0124 from T0124-1bi5A.231.5.index # command:# created fragments for T0124 from T0124-1bi5A.232.5.index # command:# created fragments for T0124 from T0124-1bk7A.168.3.index # command:# created fragments for T0124 from T0124-1bk7A.169.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1bk7A # command:# created fragments for T0124 from T0124-1bk7A.170.0.index # command:# created fragments for T0124 from T0124-1bk7A.171.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1bk7A # command:# created fragments for T0124 from T0124-1bk7A.172.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1bk7A # command:# command:# created fragments for T0124 from T0124-1bk7A.173.2.index # command:# created fragments for T0124 from T0124-1bk7A.174.5.index # command:# created fragments for T0124 from T0124-1bkpA.224.5.index # command:# created fragments for T0124 from T0124-1bkpA.225.5.index # command:# created fragments for T0124 from T0124-1bkpA.226.3.index # command:# created fragments for T0124 from T0124-1bkpA.226.5.index # command:# created fragments for T0124 from T0124-1bkpA.227.4.index # command:# created fragments for T0124 from T0124-1bkpA.229.0.index # command:# created fragments for T0124 from T0124-1bkpA.230.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1bkpA # command:# command:# created fragments for T0124 from T0124-1bm8.101.5.index # command:# created fragments for T0124 from T0124-1bm8.103.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1bm8 # command:# command:# created fragments for T0124 from T0124-1bm8.104.0.index # command:# created fragments for T0124 from T0124-1bm8.105.2.index # command:# created fragments for T0124 from T0124-1bm8.106.5.index # command:# created fragments for T0124 from T0124-1bs0A.11.4.index # command:# created fragments for T0124 from T0124-1bs0A.152.5.index # command:# created fragments for T0124 from T0124-1bs0A.153.3.index # command:# created fragments for T0124 from T0124-1bs0A.154.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1bs0A # command:# created fragments for T0124 from T0124-1bs0A.155.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1bs0A # command:# created fragments for T0124 from T0124-1bs0A.156.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1bs0A # command:# created fragments for T0124 from T0124-1bs0A.157.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1bs0A # command:# command:# created fragments for T0124 from T0124-1bs0A.158.5.index # command:# created fragments for T0124 from T0124-1bu7A.188.2.index # command:# created fragments for T0124 from T0124-1bu7A.189.3.index # command:# created fragments for T0124 from T0124-1bu7A.190.3.index # command:# created fragments for T0124 from T0124-1bu7A.193.4.index # command:# created fragments for T0124 from T0124-1byrA.1.2.index # command:# created fragments for T0124 from T0124-1byrA.2.0.index # command:# created fragments for T0124 from T0124-1byrA.3.0.index # command:# created fragments for T0124 from T0124-1byrA.4.3.index # command:# created fragments for T0124 from T0124-1c3cA.132.2.index # command:# created fragments for T0124 from T0124-1c3cA.133.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1c3cA # command:# created fragments for T0124 from T0124-1c3cA.28.3.index # command:# created fragments for T0124 from T0124-1c3cA.29.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1c3cA # command:# command:# created fragments for T0124 from T0124-1c3cA.30.3.index # command:# created fragments for T0124 from T0124-1ccwB.186.2.index # command:# created fragments for T0124 from T0124-1ccwB.187.2.index # command:# created fragments for T0124 from T0124-1ccwB.187.3.index # command:# created fragments for T0124 from T0124-1ccwB.188.0.index # command:# created fragments for T0124 from T0124-1ccwB.188.5.index # command:# created fragments for T0124 from T0124-1ccwB.189.2.index # command:# created fragments for T0124 from T0124-1ccwB.190.2.index # command:# created fragments for T0124 from T0124-1ccwB.191.2.index # command:# created fragments for T0124 from T0124-1ccwB.192.0.index # command:# created fragments for T0124 from T0124-1ccwB.193.0.index # command:# created fragments for T0124 from T0124-1ccwB.194.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1ccwB # command:# created fragments for T0124 from T0124-1ccwB.195.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1ccwB # command:# created fragments for T0124 from T0124-1ccwB.195.2.index # command:# created fragments for T0124 from T0124-1ccwB.196.0.index # command:# created fragments for T0124 from T0124-1ccwB.196.2.index # command:# created fragments for T0124 from T0124-1ccwB.197.0.index # command:# created fragments for T0124 from T0124-1ccwB.197.2.index # command:# created fragments for T0124 from T0124-1ccwB.198.0.index # command:# created fragments for T0124 from T0124-1ccwB.198.2.index # command:# created fragments for T0124 from T0124-1ccwB.199.0.index # command:# created fragments for T0124 from T0124-1ccwB.200.0.index # command:# created fragments for T0124 from T0124-1ccwB.201.0.index # command:# created fragments for T0124 from T0124-1ccwB.201.4.index # command:# created fragments for T0124 from T0124-1ccwB.202.2.index # command:# created fragments for T0124 from T0124-1ccwB.38.2.index # command:# created fragments for T0124 from T0124-1ccwB.39.0.index # command:# created fragments for T0124 from T0124-1ccwB.40.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1ccwB # command:# command:# created fragments for T0124 from T0124-1ccwB.41.3.index # command:# created fragments for T0124 from T0124-1ccwB.42.3.index # command:# created fragments for T0124 from T0124-1ceqA.205.5.index # command:# created fragments for T0124 from T0124-1cghA.111.2.index # command:# created fragments for T0124 from T0124-1cghA.112.0.index # command:# created fragments for T0124 from T0124-1cghA.113.0.index # command:# created fragments for T0124 from T0124-1cghA.114.0.index # command:# created fragments for T0124 from T0124-1cghA.115.0.index # command:# created fragments for T0124 from T0124-1cghA.116.0.index # command:# created fragments for T0124 from T0124-1cghA.117.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1cghA # command:# command:# created fragments for T0124 from T0124-1cghA.118.4.index # command:# created fragments for T0124 from T0124-1chd.123.0.index # command:# created fragments for T0124 from T0124-1chd.124.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1chd # command:# command:# created fragments for T0124 from T0124-1chd.125.2.index # command:# created fragments for T0124 from T0124-1chd.126.2.index # command:# created fragments for T0124 from T0124-1chd.127.4.index # command:# created fragments for T0124 from T0124-1chd.129.4.index # command:# created fragments for T0124 from T0124-1chd.131.2.index # command:# created fragments for T0124 from T0124-1chd.132.3.index # command:# created fragments for T0124 from T0124-1chmA.62.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1chmA # command:# created fragments for T0124 from T0124-1chmA.63.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1chmA # command:# created fragments for T0124 from T0124-1chmA.64.2.index # command:# created fragments for T0124 from T0124-1chmA.65.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1chmA # command:# command:# created fragments for T0124 from T0124-1chmA.66.4.index # command:# created fragments for T0124 from T0124-1chmA.68.5.index # command:# created fragments for T0124 from T0124-1clxA.111.5.index # command:# created fragments for T0124 from T0124-1clxA.112.4.index # command:# created fragments for T0124 from T0124-1clxA.113.4.index # command:# created fragments for T0124 from T0124-1clxA.82.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1clxA # command:# created fragments for T0124 from T0124-1clxA.83.0.index # command:# created fragments for T0124 from T0124-1clxA.84.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1clxA # command:# created fragments for T0124 from T0124-1clxA.85.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1clxA # command:# command:# created fragments for T0124 from T0124-1clxA.86.4.index # command:# created fragments for T0124 from T0124-1clxA.87.4.index # command:# created fragments for T0124 from T0124-1cmnA.101.3.index # command:# created fragments for T0124 from T0124-1cmnA.102.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1cmnA # command:# created fragments for T0124 from T0124-1cmnA.103.2.index # command:# created fragments for T0124 from T0124-1cmnA.108.4.index # command:# created fragments for T0124 from T0124-1cmnA.115.4.index # command:# created fragments for T0124 from T0124-1cmnA.116.2.index # command:# created fragments for T0124 from T0124-1cmnA.117.0.index # command:# created fragments for T0124 from T0124-1cmnA.118.2.index # command:# created fragments for T0124 from T0124-1cmnA.119.3.index # command:# created fragments for T0124 from T0124-1cmnA.120.2.index # command:# created fragments for T0124 from T0124-1cmnA.122.3.index # command:# created fragments for T0124 from T0124-1cmnA.128.4.index # command:# created fragments for T0124 from T0124-1cmnA.135.3.index # command:# created fragments for T0124 from T0124-1cmnA.218.4.index # command:# created fragments for T0124 from T0124-1cmnA.223.4.index # command:# created fragments for T0124 from T0124-1cmnA.224.2.index # command:# created fragments for T0124 from T0124-1cmnA.225.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1cmnA # command:# command:# created fragments for T0124 from T0124-1cmnA.226.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1cmnA # command:# command:# created fragments for T0124 from T0124-1cmnA.227.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1cmnA # command:# command:# created fragments for T0124 from T0124-1cmnA.228.2.index # command:# created fragments for T0124 from T0124-1cmnA.229.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1cmnA # command:# command:# created fragments for T0124 from T0124-1cmnA.230.0.index # command:# created fragments for T0124 from T0124-1cmnA.231.0.index # command:# created fragments for T0124 from T0124-1cmnA.232.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1cmnA # command:# command:# created fragments for T0124 from T0124-1cqxA.128.5.index # command:# created fragments for T0124 from T0124-1cqxA.129.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1cqxA # command:# command:# created fragments for T0124 from T0124-1cqxA.130.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1cqxA # command:# command:# created fragments for T0124 from T0124-1cqxA.131.5.index # command:# created fragments for T0124 from T0124-1cqxA.132.5.index # command:# created fragments for T0124 from T0124-1ctqA.179.3.index # command:# created fragments for T0124 from T0124-1ctqA.180.3.index # command:# created fragments for T0124 from T0124-1ctqA.181.2.index # command:# created fragments for T0124 from T0124-1ctqA.183.0.index # command:# created fragments for T0124 from T0124-1ctqA.184.0.index # command:# created fragments for T0124 from T0124-1ctqA.185.2.index # command:# created fragments for T0124 from T0124-1cv8.174.3.index # command:# created fragments for T0124 from T0124-1cv8.175.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1cv8 # command:# command:# created fragments for T0124 from T0124-1cv8.176.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1cv8 # command:# command:# created fragments for T0124 from T0124-1cv8.177.2.index # command:# created fragments for T0124 from T0124-1cv8.178.3.index # command:# created fragments for T0124 from T0124-1cv8.180.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1cv8 # command:# command:# created fragments for T0124 from T0124-1cv8.181.3.index # command:# created fragments for T0124 from T0124-1cvrA.162.4.index # command:# created fragments for T0124 from T0124-1cvrA.163.2.index # command:# created fragments for T0124 from T0124-1cvrA.164.2.index # command:# created fragments for T0124 from T0124-1cvrA.165.5.index # command:# created fragments for T0124 from T0124-1cxqA.52.2.index # command:# created fragments for T0124 from T0124-1cxqA.53.2.index # command:# created fragments for T0124 from T0124-1cxqA.53.4.index # command:# created fragments for T0124 from T0124-1cxqA.53.5.index # command:# created fragments for T0124 from T0124-1cxqA.55.3.index # command:# created fragments for T0124 from T0124-1cxqA.56.5.index # command:# created fragments for T0124 from T0124-1d2nA.193.5.index # command:# created fragments for T0124 from T0124-1d2nA.194.3.index # command:# created fragments for T0124 from T0124-1d2nA.195.5.index # command:# created fragments for T0124 from T0124-1d3vA.213.5.index # command:# created fragments for T0124 from T0124-1d3vA.214.4.index # command:# created fragments for T0124 from T0124-1d3vA.215.5.index # command:# created fragments for T0124 from T0124-1dciA.100.3.index # command:# created fragments for T0124 from T0124-1dciA.100.5.index # command:# created fragments for T0124 from T0124-1dciA.92.3.index # command:# created fragments for T0124 from T0124-1dciA.93.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1dciA # command:# command:# created fragments for T0124 from T0124-1dciA.94.0.index # command:# created fragments for T0124 from T0124-1dciA.94.2.index # command:# created fragments for T0124 from T0124-1dciA.95.0.index # command:# created fragments for T0124 from T0124-1dciA.95.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1dciA # command:# command:# created fragments for T0124 from T0124-1dciA.96.0.index # command:# created fragments for T0124 from T0124-1dciA.96.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1dciA # command:# command:# created fragments for T0124 from T0124-1dciA.97.0.index # command:# created fragments for T0124 from T0124-1dciA.97.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1dciA # command:# command:# created fragments for T0124 from T0124-1dciA.98.0.index # command:# created fragments for T0124 from T0124-1dciA.98.2.index # command:# created fragments for T0124 from T0124-1dciA.99.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1dciA # command:# command:# created fragments for T0124 from T0124-1dciA.99.3.index # command:# created fragments for T0124 from T0124-1dcs.165.0.index # command:# created fragments for T0124 from T0124-1dcs.165.2.index # command:# created fragments for T0124 from T0124-1dcs.166.0.index # command:# created fragments for T0124 from T0124-1dcs.166.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1dcs # command:# command:# created fragments for T0124 from T0124-1dcs.167.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1dcs # command:# command:# created fragments for T0124 from T0124-1dcs.168.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1dcs # command:# command:# created fragments for T0124 from T0124-1dcs.169.2.index # command:# created fragments for T0124 from T0124-1dcs.170.4.index # command:# created fragments for T0124 from T0124-1dcs.171.5.index # command:# created fragments for T0124 from T0124-1dcs.172.5.index # command:# created fragments for T0124 from T0124-1dcs.173.5.index # command:# created fragments for T0124 from T0124-1dcs.175.5.index # command:# created fragments for T0124 from T0124-1dcs.177.0.index # command:# created fragments for T0124 from T0124-1dcs.178.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1dcs # command:# command:# created fragments for T0124 from T0124-1dcs.179.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1dcs # command:# command:# created fragments for T0124 from T0124-1dcs.180.0.index # command:# created fragments for T0124 from T0124-1dcs.181.0.index # command:# created fragments for T0124 from T0124-1dcs.182.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1dcs # command:# command:# created fragments for T0124 from T0124-1dcs.183.3.index # command:# created fragments for T0124 from T0124-1dekA.123.4.index # command:# created fragments for T0124 from T0124-1dekA.124.2.index # command:# created fragments for T0124 from T0124-1dekA.125.3.index # command:# created fragments for T0124 from T0124-1dekA.126.3.index # command:# created fragments for T0124 from T0124-1dfmA.152.4.index # command:# created fragments for T0124 from T0124-1dfmA.153.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1dfmA # command:# command:# created fragments for T0124 from T0124-1dfmA.154.0.index # command:# created fragments for T0124 from T0124-1dfmA.155.0.index # command:# created fragments for T0124 from T0124-1dfmA.156.0.index # command:# created fragments for T0124 from T0124-1dfmA.157.0.index # command:# created fragments for T0124 from T0124-1dfmA.158.0.index # command:# created fragments for T0124 from T0124-1dfmA.159.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1dfmA # command:# command:# created fragments for T0124 from T0124-1dfmA.160.4.index # command:# created fragments for T0124 from T0124-1dfmA.161.3.index # command:# created fragments for T0124 from T0124-1dgyA.228.5.index # command:# created fragments for T0124 from T0124-1dgyA.229.3.index # command:# created fragments for T0124 from T0124-1dgyA.230.2.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1dgyA # command:# command:# created fragments for T0124 from T0124-1dozA.124.5.index # command:# created fragments for T0124 from T0124-1dozA.25.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1dozA # command:# command:# created fragments for T0124 from T0124-1dozA.26.4.index # command:# created fragments for T0124 from T0124-1dozA.27.3.index # command:# created fragments for T0124 from T0124-1dp7P.90.4.index # command:# created fragments for T0124 from T0124-1dp7P.91.2.index # command:# created fragments for T0124 from T0124-1dp7P.92.4.index # command:# created fragments for T0124 from T0124-1dp7P.93.4.index # command:# created fragments for T0124 from T0124-1dpo.48.3.index # command:# created fragments for T0124 from T0124-1dpo.49.4.index # command:# created fragments for T0124 from T0124-1dugA.211.5.index # command:# created fragments for T0124 from T0124-1dugA.212.2.index # command:# created fragments for T0124 from T0124-1dugA.213.2.index # command:# created fragments for T0124 from T0124-1duzA.76.4.index # command:# created fragments for T0124 from T0124-1duzA.76.5.index # command:# created fragments for T0124 from T0124-1duzA.77.4.index # command:# created fragments for T0124 from T0124-1duzA.77.5.index # command:# created fragments for T0124 from T0124-1duzA.78.2.index # command:# created fragments for T0124 from T0124-1duzA.78.4.index # command:# created fragments for T0124 from T0124-1duzA.79.2.index # command:# created fragments for T0124 from T0124-1duzA.80.2.index # command:# created fragments for T0124 from T0124-1duzA.80.4.index # command:# created fragments for T0124 from T0124-1duzA.81.0.index # command:# created fragments for T0124 from T0124-1duzA.82.0.index # command:# created fragments for T0124 from T0124-1duzA.83.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1duzA # command:# command:# created fragments for T0124 from T0124-1duzA.84.0.index # command:# created fragments for T0124 from T0124-1duzA.85.0.index # command:# created fragments for T0124 from T0124-1duzA.86.0.index # command:# created fragments for T0124 from T0124-1duzA.87.0.index # command:# created fragments for T0124 from T0124-1duzA.88.0.index # command:# created fragments for T0124 from T0124-1duzA.89.0.index # command:# created fragments for T0124 from T0124-1duzA.90.0.index # command:# created fragments for T0124 from T0124-1duzA.91.3.index # command:# created fragments for T0124 from T0124-1ecpA.186.5.index # command:# created fragments for T0124 from T0124-1ek0A.103.5.index # command:# created fragments for T0124 from T0124-1ek0A.104.5.index # command:# created fragments for T0124 from T0124-1ek0A.107.5.index # command:# created fragments for T0124 from T0124-1ek0A.108.5.index # command:# created fragments for T0124 from T0124-1ek0A.109.4.index # command:# created fragments for T0124 from T0124-1ek0A.110.4.index # command:# created fragments for T0124 from T0124-1elkA.59.2.index # command:# created fragments for T0124 from T0124-1elrA.21.2.index # command:# created fragments for T0124 from T0124-1elrA.22.0.index # command:# created fragments for T0124 from T0124-1elrA.23.0.index # command:# created fragments for T0124 from T0124-1elrA.24.0.index # command:# created fragments for T0124 from T0124-1elrA.25.0.index # command:# created fragments for T0124 from T0124-1elrA.25.4.index # command:# created fragments for T0124 from T0124-1elrA.26.3.index # command:# created fragments for T0124 from T0124-1elrA.27.4.index # command:# created fragments for T0124 from T0124-1elrA.29.0.index # command:# created fragments for T0124 from T0124-1elrA.30.0.index # command:# created fragments for T0124 from T0124-1elrA.31.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1elrA # command:# command:# created fragments for T0124 from T0124-1elrA.32.5.index # command:# created fragments for T0124 from T0124-1elrA.34.2.index # command:# created fragments for T0124 from T0124-1et9A.156.5.index # command:# created fragments for T0124 from T0124-1et9A.160.5.index # command:# created fragments for T0124 from T0124-1ezm.137.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1ezm # command:# command:# created fragments for T0124 from T0124-1ezm.138.0.index # command:# created fragments for T0124 from T0124-1ezm.139.0.index # command:# created fragments for T0124 from T0124-1ezm.140.0.index # command:# created fragments for T0124 from T0124-1ezm.141.0.index # command:# created fragments for T0124 from T0124-1ezm.142.2.index # command:# created fragments for T0124 from T0124-1ezm.64.5.index # command:# created fragments for T0124 from T0124-1ezm.67.2.index # command:# created fragments for T0124 from T0124-1ezm.68.3.index # command:# created fragments for T0124 from T0124-1fce.187.5.index # command:# created fragments for T0124 from T0124-1fce.188.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1fce # command:# command:# created fragments for T0124 from T0124-1fce.189.0.index # command:# created fragments for T0124 from T0124-1fce.190.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1fce # command:# command:# created fragments for T0124 from T0124-1fce.191.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1fce # command:# command:# created fragments for T0124 from T0124-1fce.192.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1fce # command:# command:# created fragments for T0124 from T0124-1fce.193.2.index # command:# created fragments for T0124 from T0124-1fce.194.2.index # command:# created fragments for T0124 from T0124-1fce.195.4.index # command:# created fragments for T0124 from T0124-1fce.196.4.index # command:# created fragments for T0124 from T0124-1fce.197.4.index # command:# created fragments for T0124 from T0124-1fce.198.4.index # command:# created fragments for T0124 from T0124-1fdr.167.5.index # command:# created fragments for T0124 from T0124-1fdr.87.3.index # command:# created fragments for T0124 from T0124-1fdr.89.4.index # command:# created fragments for T0124 from T0124-1fdr.89.5.index # command:# created fragments for T0124 from T0124-1fdr.90.5.index # command:# created fragments for T0124 from T0124-1fmb.59.5.index # command:# created fragments for T0124 from T0124-1frpA.19.4.index # command:# created fragments for T0124 from T0124-1fvkA.189.4.index # command:# created fragments for T0124 from T0124-1fvkA.190.0.index # command:# created fragments for T0124 from T0124-1fvkA.191.0.index # command:# created fragments for T0124 from T0124-1fvkA.192.5.index # command:# created fragments for T0124 from T0124-1garA.147.4.index # command:# created fragments for T0124 from T0124-1garA.148.2.index # command:# created fragments for T0124 from T0124-1garA.154.3.index # command:# created fragments for T0124 from T0124-1garA.156.3.index # command:# created fragments for T0124 from T0124-1gca.147.2.index # command:# created fragments for T0124 from T0124-1gca.147.5.index # command:# created fragments for T0124 from T0124-1gca.149.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1gca # command:# command:# created fragments for T0124 from T0124-1gca.149.2.index # command:# created fragments for T0124 from T0124-1gca.150.3.index # command:# created fragments for T0124 from T0124-1gca.151.2.index # command:# created fragments for T0124 from T0124-1gca.152.2.index # command:# created fragments for T0124 from T0124-1gca.154.2.index # command:# created fragments for T0124 from T0124-1gca.155.3.index # command:# created fragments for T0124 from T0124-1gca.231.3.index # command:# created fragments for T0124 from T0124-1gca.232.2.index # command:# created fragments for T0124 from T0124-1gof.48.5.index # command:# created fragments for T0124 from T0124-1gof.49.2.index # command:# created fragments for T0124 from T0124-1gof.50.2.index # command:# created fragments for T0124 from T0124-1gof.51.2.index # command:# created fragments for T0124 from T0124-1gox.143.2.index # command:# created fragments for T0124 from T0124-1gox.145.4.index # command:# created fragments for T0124 from T0124-1gox.146.4.index # command:# created fragments for T0124 from T0124-1gp1A.143.5.index # command:# created fragments for T0124 from T0124-1gp1A.148.5.index # command:# created fragments for T0124 from T0124-1gp1A.157.4.index # command:# created fragments for T0124 from T0124-1gp1A.158.2.index # command:# created fragments for T0124 from T0124-1gp1A.159.4.index # command:# created fragments for T0124 from T0124-1gp1A.160.3.index # command:# created fragments for T0124 from T0124-1gp1A.161.4.index # command:# created fragments for T0124 from T0124-1gp1A.161.5.index # command:# created fragments for T0124 from T0124-1gp1A.162.3.index # command:# created fragments for T0124 from T0124-1gp1A.163.0.index # command:# created fragments for T0124 from T0124-1gp1A.164.0.index # command:# created fragments for T0124 from T0124-1hfc.10.3.index # command:# created fragments for T0124 from T0124-1hfc.11.5.index # command:# created fragments for T0124 from T0124-1hfc.12.3.index # command:# created fragments for T0124 from T0124-1hfc.61.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1hfc # command:# command:# created fragments for T0124 from T0124-1hfc.61.3.index # command:# created fragments for T0124 from T0124-1hfc.61.5.index # command:# created fragments for T0124 from T0124-1hfc.62.3.index # command:# created fragments for T0124 from T0124-1hfc.63.3.index # command:# created fragments for T0124 from T0124-1hfc.86.5.index # command:# created fragments for T0124 from T0124-1hfc.88.3.index # command:# created fragments for T0124 from T0124-1hfc.89.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1hfc # command:# command:# created fragments for T0124 from T0124-1hfc.89.3.index # command:# created fragments for T0124 from T0124-1hfc.90.3.index # command:# created fragments for T0124 from T0124-1hfc.91.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1hfc # command:# command:# created fragments for T0124 from T0124-1hfc.92.2.index # command:# created fragments for T0124 from T0124-1hfc.93.3.index # command:# created fragments for T0124 from T0124-1htrB.223.2.index # command:# created fragments for T0124 from T0124-1htrB.224.4.index # command:# created fragments for T0124 from T0124-1htrB.225.0.index # command:# created fragments for T0124 from T0124-1htrB.226.0.index # command:# created fragments for T0124 from T0124-1htrB.227.0.index # command:# created fragments for T0124 from T0124-1htrB.228.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1htrB # command:# command:# created fragments for T0124 from T0124-1htrB.230.3.index # command:# created fragments for T0124 from T0124-1huw.221.4.index # command:# created fragments for T0124 from T0124-1ixh.121.5.index # command:# created fragments for T0124 from T0124-1ixh.122.4.index # command:# created fragments for T0124 from T0124-1kapP.139.4.index # command:# created fragments for T0124 from T0124-1kveB.57.5.index # command:# created fragments for T0124 from T0124-1kveB.58.5.index # command:# created fragments for T0124 from T0124-1kveB.60.2.index # command:# created fragments for T0124 from T0124-1lid.81.5.index # command:# created fragments for T0124 from T0124-1lid.82.3.index # command:# created fragments for T0124 from T0124-1lid.83.3.index # command:# created fragments for T0124 from T0124-1lid.84.3.index # command:# created fragments for T0124 from T0124-1lid.85.4.index # command:# created fragments for T0124 from T0124-1lldA.119.2.index # command:# created fragments for T0124 from T0124-1lldA.120.3.index # command:# created fragments for T0124 from T0124-1lldA.121.2.index # command:# created fragments for T0124 from T0124-1lldA.123.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1lldA # command:# command:# created fragments for T0124 from T0124-1lopA.61.2.index # command:# created fragments for T0124 from T0124-1lopA.62.4.index # command:# created fragments for T0124 from T0124-1lopA.63.5.index # command:# created fragments for T0124 from T0124-1lopA.65.3.index # command:# created fragments for T0124 from T0124-1louA.159.3.index # command:# created fragments for T0124 from T0124-1lst.100.0.index # command:# created fragments for T0124 from T0124-1lst.100.2.index # command:# created fragments for T0124 from T0124-1lst.101.2.index # command:# created fragments for T0124 from T0124-1lst.102.4.index # command:# created fragments for T0124 from T0124-1lst.104.2.index # command:# created fragments for T0124 from T0124-1lst.105.3.index # command:# created fragments for T0124 from T0124-1lst.106.4.index # command:# created fragments for T0124 from T0124-1lst.99.0.index # command:# created fragments for T0124 from T0124-1mdl.45.2.index # command:# created fragments for T0124 from T0124-1mdl.46.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1mdl # command:# command:# created fragments for T0124 from T0124-1mdl.47.2.index # command:# created fragments for T0124 from T0124-1mdl.47.3.index # command:# created fragments for T0124 from T0124-1mdl.48.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1mdl # command:# command:# created fragments for T0124 from T0124-1mdl.50.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1mdl # command:# command:# created fragments for T0124 from T0124-1mdl.51.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1mdl # command:# command:# created fragments for T0124 from T0124-1mrj.6.5.index # command:# created fragments for T0124 from T0124-1mrj.8.2.index # command:# created fragments for T0124 from T0124-1mroA.31.0.index # command:# created fragments for T0124 from T0124-1mroA.32.0.index # command:# created fragments for T0124 from T0124-1mroA.32.4.index # command:# created fragments for T0124 from T0124-1mroA.34.0.index # command:# created fragments for T0124 from T0124-1mroA.35.0.index # command:# created fragments for T0124 from T0124-1mroA.36.0.index # command:# created fragments for T0124 from T0124-1mroA.37.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1mroA # command:# command:# created fragments for T0124 from T0124-1mroA.40.3.index # command:# created fragments for T0124 from T0124-1mroA.41.2.index # command:# created fragments for T0124 from T0124-1mroA.42.2.index # command:# created fragments for T0124 from T0124-1mroA.43.2.index # command:# created fragments for T0124 from T0124-1mroA.45.4.index # command:# created fragments for T0124 from T0124-1mroA.46.0.index # command:# created fragments for T0124 from T0124-1mroA.47.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1mroA # command:# command:# created fragments for T0124 from T0124-1mroA.48.2.index # command:# created fragments for T0124 from T0124-1mroA.49.3.index # command:# created fragments for T0124 from T0124-1mroA.50.3.index # command:# created fragments for T0124 from T0124-1mroA.51.3.index # command:# created fragments for T0124 from T0124-1mroC.10.4.index # command:# created fragments for T0124 from T0124-1mroC.134.4.index # command:# created fragments for T0124 from T0124-1mroC.135.2.index # command:# created fragments for T0124 from T0124-1mroC.136.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1mroC # command:# command:# created fragments for T0124 from T0124-1mroC.137.0.index # command:# created fragments for T0124 from T0124-1mroC.138.2.index # command:# created fragments for T0124 from T0124-1mroC.139.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1mroC # command:# command:# created fragments for T0124 from T0124-1mroC.139.2.index # command:# created fragments for T0124 from T0124-1mroC.140.2.index # command:# created fragments for T0124 from T0124-1mroC.140.3.index # command:# created fragments for T0124 from T0124-1mroC.141.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1mroC # command:# command:# created fragments for T0124 from T0124-1mroC.142.0.index # command:# created fragments for T0124 from T0124-1mroC.143.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1mroC # command:# command:# created fragments for T0124 from T0124-1mroC.143.4.index # command:# created fragments for T0124 from T0124-1mroC.144.3.index # command:# created fragments for T0124 from T0124-1mroC.145.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1mroC # command:# command:# created fragments for T0124 from T0124-1mroC.146.3.index # command:# created fragments for T0124 from T0124-1msc.74.4.index # command:# created fragments for T0124 from T0124-1msc.75.3.index # command:# created fragments for T0124 from T0124-1msc.75.4.index # command:# created fragments for T0124 from T0124-1msc.77.2.index # command:# created fragments for T0124 from T0124-1msc.78.3.index # command:# created fragments for T0124 from T0124-1msc.80.3.index # command:# created fragments for T0124 from T0124-1msk.157.2.index # command:# created fragments for T0124 from T0124-1msk.158.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1msk # command:# command:# created fragments for T0124 from T0124-1msk.159.0.index # command:# created fragments for T0124 from T0124-1msk.160.0.index # command:# created fragments for T0124 from T0124-1msk.161.0.index # command:# created fragments for T0124 from T0124-1msk.162.0.index # command:# created fragments for T0124 from T0124-1msk.162.5.index # command:# created fragments for T0124 from T0124-1msk.163.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1msk # command:# command:# created fragments for T0124 from T0124-1msk.164.4.index # command:# created fragments for T0124 from T0124-1msk.166.5.index # command:# created fragments for T0124 from T0124-1mtyD.26.2.index # command:# created fragments for T0124 from T0124-1mtyD.27.5.index # command:# created fragments for T0124 from T0124-1mtyD.28.4.index # command:# created fragments for T0124 from T0124-1mtyD.29.5.index # command:# created fragments for T0124 from T0124-1mtyD.30.5.index # command:# created fragments for T0124 from T0124-1mtyD.31.4.index # command:# created fragments for T0124 from T0124-1mtyD.32.2.index # command:# created fragments for T0124 from T0124-1mtyD.33.3.index # command:# created fragments for T0124 from T0124-1mtyD.33.4.index # command:# created fragments for T0124 from T0124-1mtyD.34.3.index # command:# created fragments for T0124 from T0124-1mtyD.35.4.index # command:# created fragments for T0124 from T0124-1mugA.165.3.index # command:# created fragments for T0124 from T0124-1nbaA.181.4.index # command:# created fragments for T0124 from T0124-1nbaA.182.3.index # command:# created fragments for T0124 from T0124-1nbaA.183.2.index # command:# created fragments for T0124 from T0124-1nbaA.184.5.index # command:# created fragments for T0124 from T0124-1nbaA.84.4.index # command:# created fragments for T0124 from T0124-1nbaA.85.2.index # command:# created fragments for T0124 from T0124-1nbaA.86.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1nbaA # command:# command:# created fragments for T0124 from T0124-1nbaA.87.2.index # command:# created fragments for T0124 from T0124-1nbaA.88.2.index # command:# created fragments for T0124 from T0124-1nls.114.5.index # command:# created fragments for T0124 from T0124-1noa.54.2.index # command:# created fragments for T0124 from T0124-1noa.55.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1noa # command:# command:# created fragments for T0124 from T0124-1noa.56.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1noa # command:# command:# created fragments for T0124 from T0124-1noa.57.0.index # command:# created fragments for T0124 from T0124-1noa.58.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1noa # command:# command:# created fragments for T0124 from T0124-1noa.59.0.index # command:# created fragments for T0124 from T0124-1noa.60.3.index # command:# created fragments for T0124 from T0124-1nox.18.4.index # command:# created fragments for T0124 from T0124-1nox.19.5.index # command:# created fragments for T0124 from T0124-1nox.38.4.index # command:# created fragments for T0124 from T0124-1nox.39.3.index # command:# created fragments for T0124 from T0124-1nox.40.0.index # command:# created fragments for T0124 from T0124-1nox.41.0.index # command:# created fragments for T0124 from T0124-1nox.42.0.index # command:# created fragments for T0124 from T0124-1nox.43.0.index # command:# created fragments for T0124 from T0124-1nox.44.0.index # command:# created fragments for T0124 from T0124-1nox.45.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1nox # command:# command:# created fragments for T0124 from T0124-1nox.46.2.index # command:# created fragments for T0124 from T0124-1np1A.10.2.index # command:# created fragments for T0124 from T0124-1np1A.209.5.index # command:# created fragments for T0124 from T0124-1np1A.210.0.index # command:# created fragments for T0124 from T0124-1np1A.211.0.index # command:# created fragments for T0124 from T0124-1np1A.212.3.index # command:# created fragments for T0124 from T0124-1nscA.95.4.index # command:# created fragments for T0124 from T0124-1nscA.96.3.index # command:# created fragments for T0124 from T0124-1nscA.97.3.index # command:# created fragments for T0124 from T0124-1nscA.98.3.index # command:# created fragments for T0124 from T0124-1nulA.133.4.index # command:# created fragments for T0124 from T0124-1nulA.134.5.index # command:# created fragments for T0124 from T0124-1pbwA.116.4.index # command:# created fragments for T0124 from T0124-1pbwA.117.3.index # command:# created fragments for T0124 from T0124-1pbwA.117.5.index # command:# created fragments for T0124 from T0124-1pbwA.118.5.index # command:# created fragments for T0124 from T0124-1pbwA.120.4.index # command:# created fragments for T0124 from T0124-1pbwA.122.2.index # command:# created fragments for T0124 from T0124-1pda.165.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1pda # command:# command:# created fragments for T0124 from T0124-1pda.166.2.index # command:# created fragments for T0124 from T0124-1pda.167.4.index # command:# created fragments for T0124 from T0124-1pda.182.2.index # command:# created fragments for T0124 from T0124-1pda.183.4.index # command:# created fragments for T0124 from T0124-1pda.185.5.index # command:# created fragments for T0124 from T0124-1pda.197.3.index # command:# created fragments for T0124 from T0124-1pda.198.3.index # command:# created fragments for T0124 from T0124-1pda.199.4.index # command:# created fragments for T0124 from T0124-1pda.200.5.index # command:# created fragments for T0124 from T0124-1pda.202.4.index # command:# created fragments for T0124 from T0124-1pdo.184.3.index # command:# created fragments for T0124 from T0124-1pdo.185.3.index # command:# created fragments for T0124 from T0124-1pdo.187.4.index # command:# created fragments for T0124 from T0124-1pmi.137.4.index # command:# created fragments for T0124 from T0124-1pmi.138.3.index # command:# created fragments for T0124 from T0124-1pmi.139.3.index # command:# created fragments for T0124 from T0124-1pnkA.203.4.index # command:# created fragments for T0124 from T0124-1pnkA.203.5.index # command:# created fragments for T0124 from T0124-1pnkA.204.2.index # command:# created fragments for T0124 from T0124-1pnkA.204.4.index # command:# created fragments for T0124 from T0124-1pnkA.205.2.index # command:# created fragments for T0124 from T0124-1pnkA.206.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1pnkA # command:# command:# created fragments for T0124 from T0124-1pnkA.207.0.index # command:# created fragments for T0124 from T0124-1pnkA.208.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1pnkA # command:# command:# created fragments for T0124 from T0124-1pnkA.209.2.index # command:# created fragments for T0124 from T0124-1pnkA.210.2.index # command:# created fragments for T0124 from T0124-1pnkA.211.3.index # command:# created fragments for T0124 from T0124-1pnkA.213.3.index # command:# created fragments for T0124 from T0124-1pnkA.213.4.index # command:# created fragments for T0124 from T0124-1ppfE.49.5.index # command:# created fragments for T0124 from T0124-1ppfE.50.4.index # command:# created fragments for T0124 from T0124-1ppfE.51.5.index # command:# created fragments for T0124 from T0124-1pprM.203.3.index # command:# created fragments for T0124 from T0124-1pprM.204.3.index # command:# created fragments for T0124 from T0124-1pprM.205.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1pprM # command:# command:# created fragments for T0124 from T0124-1pprM.206.2.index # command:# created fragments for T0124 from T0124-1pprM.206.5.index # command:# created fragments for T0124 from T0124-1pprM.207.3.index # command:# created fragments for T0124 from T0124-1pprM.208.4.index # command:# created fragments for T0124 from T0124-1pprM.209.3.index # command:# created fragments for T0124 from T0124-1pprM.210.4.index # command:# created fragments for T0124 from T0124-1pprM.211.4.index # command:# created fragments for T0124 from T0124-1pprM.212.5.index # command:# created fragments for T0124 from T0124-1pszA.142.5.index # command:# created fragments for T0124 from T0124-1pszA.33.2.index # command:# created fragments for T0124 from T0124-1pszA.34.4.index # command:# created fragments for T0124 from T0124-1pszA.35.3.index # command:# created fragments for T0124 from T0124-1pszA.36.3.index # command:# created fragments for T0124 from T0124-1pszA.37.3.index # command:# created fragments for T0124 from T0124-1qb7A.91.5.index # command:# created fragments for T0124 from T0124-1qd9A.60.0.index # command:# created fragments for T0124 from T0124-1qd9A.62.5.index # command:# created fragments for T0124 from T0124-1qd9A.63.4.index # command:# created fragments for T0124 from T0124-1qd9A.66.3.index # command:# created fragments for T0124 from T0124-1qd9A.68.4.index # command:# created fragments for T0124 from T0124-1qg8A.3.4.index # command:# created fragments for T0124 from T0124-1qg8A.5.0.index # command:# created fragments for T0124 from T0124-1qgiA.104.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1qgiA # command:# command:# created fragments for T0124 from T0124-1qgiA.104.3.index # command:# created fragments for T0124 from T0124-1qgiA.105.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1qgiA # command:# command:# created fragments for T0124 from T0124-1qgiA.105.4.index # command:# created fragments for T0124 from T0124-1qgiA.106.0.index # command:# created fragments for T0124 from T0124-1qgiA.107.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1qgiA # command:# command:# created fragments for T0124 from T0124-1qgiA.108.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1qgiA # command:# command:# created fragments for T0124 from T0124-1qgiA.109.3.index # command:# created fragments for T0124 from T0124-1qgiA.110.3.index # command:# created fragments for T0124 from T0124-1qgiA.111.3.index # command:# created fragments for T0124 from T0124-1qgiA.112.5.index # command:# created fragments for T0124 from T0124-1qgiA.113.3.index # command:# created fragments for T0124 from T0124-1qgiA.114.2.index # command:# created fragments for T0124 from T0124-1qgiA.115.2.index # command:# created fragments for T0124 from T0124-1qgiA.116.3.index # command:# created fragments for T0124 from T0124-1qgiA.116.5.index # command:# created fragments for T0124 from T0124-1qgiA.164.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1qgiA # command:# command:# created fragments for T0124 from T0124-1qh3A.176.5.index # command:# created fragments for T0124 from T0124-1qh3A.177.4.index # command:# created fragments for T0124 from T0124-1qh3A.178.4.index # command:# created fragments for T0124 from T0124-1qh8A.1.4.index # command:# created fragments for T0124 from T0124-1qh8A.2.3.index # command:# created fragments for T0124 from T0124-1qh8A.5.5.index # command:# created fragments for T0124 from T0124-1qh8A.7.4.index # command:# created fragments for T0124 from T0124-1qhvA.114.4.index # command:# created fragments for T0124 from T0124-1qhvA.129.3.index # command:# created fragments for T0124 from T0124-1qhvA.130.3.index # command:# created fragments for T0124 from T0124-1qhvA.131.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1qhvA # command:# command:# created fragments for T0124 from T0124-1qhvA.132.0.index # command:# created fragments for T0124 from T0124-1qhvA.133.0.index # command:# created fragments for T0124 from T0124-1qhvA.134.0.index # command:# created fragments for T0124 from T0124-1qhvA.135.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1qhvA # command:# command:# created fragments for T0124 from T0124-1qnf.38.5.index # command:# created fragments for T0124 from T0124-1qq7A.123.2.index # command:# created fragments for T0124 from T0124-1qq7A.124.3.index # command:# created fragments for T0124 from T0124-1qq7A.125.4.index # command:# created fragments for T0124 from T0124-1qq7A.126.4.index # command:# created fragments for T0124 from T0124-1qq7A.127.2.index # command:# created fragments for T0124 from T0124-1qq7A.128.2.index # command:# created fragments for T0124 from T0124-1qq7A.36.5.index # command:# created fragments for T0124 from T0124-1qqp1.71.5.index # command:# created fragments for T0124 from T0124-1qqp1.72.5.index # command:# created fragments for T0124 from T0124-1qqp1.73.5.index # command:# created fragments for T0124 from T0124-1qtwA.20.5.index # command:# created fragments for T0124 from T0124-1qtwA.22.3.index # command:# created fragments for T0124 from T0124-1qtwA.23.2.index # command:# created fragments for T0124 from T0124-1rie.36.4.index # command:# created fragments for T0124 from T0124-1rie.37.4.index # command:# created fragments for T0124 from T0124-1rie.38.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1rie # command:# command:# created fragments for T0124 from T0124-1rie.39.2.index # command:# created fragments for T0124 from T0124-1rie.40.4.index # command:# created fragments for T0124 from T0124-1ryc.145.2.index # command:# created fragments for T0124 from T0124-1ryc.146.2.index # command:# created fragments for T0124 from T0124-1ryc.148.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1ryc # command:# command:# created fragments for T0124 from T0124-1ryc.148.4.index # command:# created fragments for T0124 from T0124-1ryc.149.4.index # command:# created fragments for T0124 from T0124-1ryc.150.4.index # command:# created fragments for T0124 from T0124-1ryc.151.5.index # command:# created fragments for T0124 from T0124-1ryc.153.2.index # command:# created fragments for T0124 from T0124-1ryc.153.5.index # command:# created fragments for T0124 from T0124-1ryc.154.5.index # command:# created fragments for T0124 from T0124-1shkA.130.2.index # command:# created fragments for T0124 from T0124-1shkA.131.0.index # command:# created fragments for T0124 from T0124-1shkA.132.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1shkA # command:# command:# created fragments for T0124 from T0124-1shkA.133.3.index # command:# created fragments for T0124 from T0124-1sluA.56.3.index # command:# created fragments for T0124 from T0124-1sluA.57.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1sluA # command:# command:# created fragments for T0124 from T0124-1smrA.140.5.index # command:# created fragments for T0124 from T0124-1smrA.141.5.index # command:# created fragments for T0124 from T0124-1smrA.142.4.index # command:# created fragments for T0124 from T0124-1smrA.144.4.index # command:# created fragments for T0124 from T0124-1sra.57.4.index # command:# created fragments for T0124 from T0124-1sra.58.3.index # command:# created fragments for T0124 from T0124-1svy.134.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1svy # command:# command:# created fragments for T0124 from T0124-1svy.135.0.index # command:# created fragments for T0124 from T0124-1svy.136.2.index # command:# created fragments for T0124 from T0124-1svy.137.5.index # command:# created fragments for T0124 from T0124-1thx.83.4.index # command:# created fragments for T0124 from T0124-1tl2A.203.2.index # command:# created fragments for T0124 from T0124-1tl2A.204.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1tl2A # command:# command:# created fragments for T0124 from T0124-1tl2A.206.4.index # command:# created fragments for T0124 from T0124-1vfrA.44.5.index # command:# created fragments for T0124 from T0124-1vfrA.45.5.index # command:# created fragments for T0124 from T0124-1vfrA.46.3.index # command:# created fragments for T0124 from T0124-1vfrA.47.4.index # command:# created fragments for T0124 from T0124-1vhh.52.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1vhh # command:# command:# created fragments for T0124 from T0124-1vhh.53.0.index # command:# created fragments for T0124 from T0124-1vhh.53.3.index # command:# created fragments for T0124 from T0124-1vhh.54.4.index # command:# created fragments for T0124 from T0124-1vhh.55.4.index # command:# created fragments for T0124 from T0124-1vhh.57.2.index # command:# created fragments for T0124 from T0124-1vid.39.4.index # command:# created fragments for T0124 from T0124-1vid.40.2.index # command:# created fragments for T0124 from T0124-1vid.40.5.index # command:# created fragments for T0124 from T0124-1vid.41.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1vid # command:# command:# created fragments for T0124 from T0124-1vid.41.4.index # command:# created fragments for T0124 from T0124-1vid.42.5.index # command:# created fragments for T0124 from T0124-1vid.45.0.index # command:# created fragments for T0124 from T0124-1vid.46.4.index # command:# created fragments for T0124 from T0124-1vns.189.5.index # command:# created fragments for T0124 from T0124-1vns.190.5.index # command:# created fragments for T0124 from T0124-1vns.191.4.index # command:# created fragments for T0124 from T0124-1vns.61.0.index # command:# created fragments for T0124 from T0124-1vns.61.4.index # command:# created fragments for T0124 from T0124-1vns.62.0.index # command:# created fragments for T0124 from T0124-1vns.63.0.index # command:# created fragments for T0124 from T0124-1vom.214.0.index # command:# created fragments for T0124 from T0124-1vom.214.3.index # command:# created fragments for T0124 from T0124-1vom.214.5.index # command:# created fragments for T0124 from T0124-1vom.215.2.index # command:# created fragments for T0124 from T0124-1vom.216.2.index # command:# created fragments for T0124 from T0124-1vom.217.2.index # command:# created fragments for T0124 from T0124-1vom.218.2.index # command:# created fragments for T0124 from T0124-1vom.219.3.index # command:# created fragments for T0124 from T0124-1vom.221.2.index # command:# created fragments for T0124 from T0124-1vom.222.2.index # command:# created fragments for T0124 from T0124-1vom.223.5.index # command:# created fragments for T0124 from T0124-1vom.224.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1vom # command:# command:# created fragments for T0124 from T0124-1vom.225.2.index # command:# created fragments for T0124 from T0124-1vom.225.4.index # command:# created fragments for T0124 from T0124-1vsrA.207.4.index # command:# created fragments for T0124 from T0124-1vsrA.208.5.index # command:# created fragments for T0124 from T0124-1vsrA.209.4.index # command:# created fragments for T0124 from T0124-1vsrA.88.5.index # command:# created fragments for T0124 from T0124-1vsrA.89.2.index # command:# created fragments for T0124 from T0124-1vsrA.90.2.index # command:# created fragments for T0124 from T0124-1vsrA.91.4.index # command:# created fragments for T0124 from T0124-1vsrA.92.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1vsrA # command:# command:# created fragments for T0124 from T0124-1vsrA.93.2.index # command:# created fragments for T0124 from T0124-1vsrA.94.4.index # command:# created fragments for T0124 from T0124-1yge.125.5.index # command:# created fragments for T0124 from T0124-1yge.126.5.index # command:# created fragments for T0124 from T0124-1yge.129.5.index # command:# created fragments for T0124 from T0124-1yge.130.5.index # command:# created fragments for T0124 from T0124-1yge.198.5.index # command:# created fragments for T0124 from T0124-1yge.199.2.index # command:# created fragments for T0124 from T0124-1yge.199.5.index # command:# created fragments for T0124 from T0124-1yge.201.5.index # command:# created fragments for T0124 from T0124-1zpdA.145.3.index # command:# created fragments for T0124 from T0124-1zpdA.146.0.index # command:# created fragments for T0124 from T0124-1zpdA.147.3.index # command:# created fragments for T0124 from T0124-2acy.59.4.index # command:# created fragments for T0124 from T0124-2acy.60.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-2acy # command:# command:# created fragments for T0124 from T0124-2acy.65.4.index # command:# created fragments for T0124 from T0124-2acy.66.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-2acy # command:# command:# created fragments for T0124 from T0124-2acy.67.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-2acy # command:# command:# created fragments for T0124 from T0124-2acy.68.0.index # command:# created fragments for T0124 from T0124-2acy.69.0.index # command:# created fragments for T0124 from T0124-2acy.70.0.index # command:# created fragments for T0124 from T0124-2acy.71.0.index # command:# created fragments for T0124 from T0124-2acy.72.0.index # command:# created fragments for T0124 from T0124-2acy.73.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-2acy # command:# command:# created fragments for T0124 from T0124-2acy.74.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-2acy # command:# command:# created fragments for T0124 from T0124-2acy.75.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-2acy # command:# command:# created fragments for T0124 from T0124-2acy.76.2.index # command:# created fragments for T0124 from T0124-2acy.77.3.index # command:# created fragments for T0124 from T0124-2acy.79.0.index # command:# created fragments for T0124 from T0124-2acy.81.4.index # command:# created fragments for T0124 from T0124-2acy.83.5.index # command:# created fragments for T0124 from T0124-2ae2A.0.0.index # command:# created fragments for T0124 from T0124-2ae2A.0.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-2ae2A # command:# command:# created fragments for T0124 from T0124-2ae2A.0.2.index # command:# created fragments for T0124 from T0124-2ae2A.2.2.index # command:# created fragments for T0124 from T0124-2ae2A.4.5.index # command:# created fragments for T0124 from T0124-2ahjB.123.3.index # command:# created fragments for T0124 from T0124-2ahjB.124.4.index # command:# created fragments for T0124 from T0124-2bbkH.10.5.index # command:# created fragments for T0124 from T0124-2bbkH.9.5.index # command:# created fragments for T0124 from T0124-2bc2A.51.4.index # command:# created fragments for T0124 from T0124-2cxbA.60.4.index # command:# created fragments for T0124 from T0124-2cxbA.64.3.index # command:# created fragments for T0124 from T0124-2cxbA.65.2.index # command:# created fragments for T0124 from T0124-2cxbA.66.2.index # command:# created fragments for T0124 from T0124-2cxbA.67.4.index # command:# created fragments for T0124 from T0124-2dnjA.194.4.index # command:# created fragments for T0124 from T0124-2dnjA.195.0.index # command:# created fragments for T0124 from T0124-2dnjA.196.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-2dnjA # command:# command:# created fragments for T0124 from T0124-2dnjA.197.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-2dnjA # command:# command:# created fragments for T0124 from T0124-2dnjA.198.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-2dnjA # command:# command:# created fragments for T0124 from T0124-2dnjA.199.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-2dnjA # command:# command:# created fragments for T0124 from T0124-2dnjA.199.3.index # command:# created fragments for T0124 from T0124-2dnjA.200.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-2dnjA # command:# command:# created fragments for T0124 from T0124-2dnjA.200.3.index # command:# created fragments for T0124 from T0124-2dnjA.201.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-2dnjA # command:# command:# created fragments for T0124 from T0124-2dnjA.202.0.index # command:# created fragments for T0124 from T0124-2dnjA.202.5.index # command:# created fragments for T0124 from T0124-2dnjA.203.0.index # command:# created fragments for T0124 from T0124-2dnjA.204.0.index # command:# created fragments for T0124 from T0124-2dnjA.205.0.index # command:# created fragments for T0124 from T0124-2dnjA.206.0.index # command:# created fragments for T0124 from T0124-2dnjA.207.2.index # command:# created fragments for T0124 from T0124-2fcbA.220.4.index # command:# created fragments for T0124 from T0124-2fcbA.221.3.index # command:# created fragments for T0124 from T0124-2fcbA.222.3.index # command:# created fragments for T0124 from T0124-2fcbA.223.3.index # command:# created fragments for T0124 from T0124-2fcbA.224.3.index # command:# created fragments for T0124 from T0124-2fcbA.225.3.index # command:# created fragments for T0124 from T0124-2fcbA.226.4.index # command:# created fragments for T0124 from T0124-2mcm.47.0.index # command:# created fragments for T0124 from T0124-2mcm.48.0.index # command:# created fragments for T0124 from T0124-2mcm.49.0.index # command:# created fragments for T0124 from T0124-2mcm.50.0.index # command:# created fragments for T0124 from T0124-2mcm.51.0.index # command:# created fragments for T0124 from T0124-2mcm.52.0.index # command:# created fragments for T0124 from T0124-2mcm.54.5.index # command:# created fragments for T0124 from T0124-2pia.30.4.index # command:# created fragments for T0124 from T0124-2pia.31.2.index # command:# created fragments for T0124 from T0124-2pia.33.5.index # command:# created fragments for T0124 from T0124-2pia.34.5.index # command:# created fragments for T0124 from T0124-2rspA.20.2.index # command:# created fragments for T0124 from T0124-2rspA.21.3.index # command:# created fragments for T0124 from T0124-2rspA.22.4.index # command:# created fragments for T0124 from T0124-2rspA.26.5.index # command:# created fragments for T0124 from T0124-2scpA.168.4.index # command:# created fragments for T0124 from T0124-2scpA.169.5.index # command:# created fragments for T0124 from T0124-2scpA.179.4.index # command:# created fragments for T0124 from T0124-2scpA.180.5.index # command:# created fragments for T0124 from T0124-2scpA.182.5.index # command:# created fragments for T0124 from T0124-2scpA.183.5.index # command:# created fragments for T0124 from T0124-2scpA.216.3.index # command:# created fragments for T0124 from T0124-2scpA.217.4.index # command:# created fragments for T0124 from T0124-2scpA.218.5.index # command:# created fragments for T0124 from T0124-2scpA.220.5.index # command:# created fragments for T0124 from T0124-2sicI.52.4.index # command:# created fragments for T0124 from T0124-2sicI.53.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-2sicI # command:# command:# created fragments for T0124 from T0124-2sicI.55.5.index # command:# created fragments for T0124 from T0124-2sicI.56.4.index # command:# created fragments for T0124 from T0124-2sqcA.131.4.index # command:# created fragments for T0124 from T0124-2sqcA.132.4.index # command:# created fragments for T0124 from T0124-2sqcA.133.5.index # command:# created fragments for T0124 from T0124-2tpsA.145.5.index # command:# created fragments for T0124 from T0124-2tpsA.168.5.index # command:# created fragments for T0124 from T0124-2tpsA.169.4.index # command:# created fragments for T0124 from T0124-2tpsA.170.5.index # command:# created fragments for T0124 from T0124-3c2c.58.2.index # command:# created fragments for T0124 from T0124-3cla.14.5.index # command:# created fragments for T0124 from T0124-3cla.15.2.index # command:# created fragments for T0124 from T0124-3cla.17.4.index # command:# created fragments for T0124 from T0124-3cla.18.5.index # command:# created fragments for T0124 from T0124-3csuA.163.5.index # command:# created fragments for T0124 from T0124-3csuA.164.5.index # command:# created fragments for T0124 from T0124-3csuA.175.4.index # command:# created fragments for T0124 from T0124-3csuA.176.4.index # command:# created fragments for T0124 from T0124-3csuA.177.5.index # command:# created fragments for T0124 from T0124-3lck.100.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-3lck # command:# command:# created fragments for T0124 from T0124-3lck.100.4.index # command:# created fragments for T0124 from T0124-3lck.101.4.index # command:# created fragments for T0124 from T0124-3lck.102.2.index # command:# created fragments for T0124 from T0124-3lck.103.4.index # command:# created fragments for T0124 from T0124-3lck.99.2.index # command:# created fragments for T0124 from T0124-3pcgA.208.2.index # command:# created fragments for T0124 from T0124-3pcgA.209.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-3pcgA # command:# command:# created fragments for T0124 from T0124-3pcgA.210.3.index # command:# created fragments for T0124 from T0124-3pcgA.210.5.index # command:# created fragments for T0124 from T0124-3pcgA.212.0.index # command:# created fragments for T0124 from T0124-3pcgA.213.0.index # command:# created fragments for T0124 from T0124-3pcgA.214.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-3pcgA # command:# command:# created fragments for T0124 from T0124-3pcgA.215.4.index # command:# created fragments for T0124 from T0124-3pcgA.216.5.index # command:# created fragments for T0124 from T0124-3tss.93.5.index # command:# created fragments for T0124 from T0124-4eugA.8.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-4eugA # command:# command:# created fragments for T0124 from T0124-4eugA.9.2.index # command:# created fragments for T0124 from T0124-4tsvA.81.2.index # command:# created fragments for T0124 from T0124-4ubpB.82.5.index # command:# created fragments for T0124 from T0124-4ubpB.83.2.index # command:# created fragments for T0124 from T0124-4ubpB.84.2.index # command:# created fragments for T0124 from T0124-5csmA.21.5.index # command:# created fragments for T0124 from T0124-5csmA.29.3.index # command:# created fragments for T0124 from T0124-5ukdA.115.5.index # command:# created fragments for T0124 from T0124-6gsvA.5.3.index # command:# created fragments for T0124 from T0124-6gsvA.6.3.index # command:# created fragments for T0124 from T0124-7odcA.0.3.index # command:# created fragments for T0124 from T0124-7odcA.2.5.index # command:# created fragments for T0124 from T0124-7odcA.4.2.index # command:# created fragments for T0124 from T0124-7odcA.4.4.index # command:# created fragments for T0124 from T0124-7odcA.6.1.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-7odcA # command:# command:# created fragments for T0124 from T0124-7odcA.7.3.index # command:# created fragments for T0124 from T0124-1reqA-local.index # command:# created conformation for T0124 by applying fragments # command:# naming current conformation t124-1reqA # command:# command:# naming current conformation t124-init # command:# command:# ScoreConform t124-rand 53.4358 bits/residue, 515 clashes t124-119l at pool[1] 138.941 bits/residue, 497 clashes 0 breaks t124-119l at pool[2] 124.77 bits/residue, 542 clashes 0 breaks t124-1a8i at pool[3] 150.563 bits/residue, 826 clashes 0 breaks t124-1a8i at pool[4] 88.3089 bits/residue, 486 clashes 0 breaks t124-1a8l at pool[5] 105.557 bits/residue, 483 clashes 0 breaks t124-1a8l at pool[6] 114.655 bits/residue, 533 clashes 0 breaks t124-1a8l at pool[7] 101.865 bits/residue, 482 clashes 0 breaks t124-1a8l at pool[8] 105.026 bits/residue, 519 clashes 0 breaks t124-1a8l at pool[9] 109 bits/residue, 512 clashes 0 breaks t124-1a8l at pool[10] 118.913 bits/residue, 514 clashes 0 breaks t124-1a8l at pool[11] 111.651 bits/residue, 612 clashes 0 breaks t124-1adoA at pool[12] 107.355 bits/residue, 580 clashes 0 breaks t124-1amp at pool[13] 106.215 bits/residue, 600 clashes 0 breaks t124-1amp at pool[14] 104.812 bits/residue, 551 clashes 0 breaks t124-1amp at pool[15] 108.248 bits/residue, 594 clashes 0 breaks t124-1atzA at pool[16] 109.562 bits/residue, 534 clashes 0 breaks t124-1b6a at pool[17] 93.6398 bits/residue, 457 clashes 0 breaks t124-1b6a at pool[18] 103.885 bits/residue, 451 clashes 0 breaks t124-1b8aA at pool[19] 100.236 bits/residue, 362 clashes 0 breaks t124-1b8aA at pool[20] 111.854 bits/residue, 475 clashes 0 breaks t124-1b8aA at pool[21] 93.7848 bits/residue, 382 clashes 0 breaks t124-1b8jA at pool[22] 104.346 bits/residue, 360 clashes 0 breaks t124-1b8jA at pool[23] 113.835 bits/residue, 454 clashes 0 breaks t124-1b8jA at pool[24] 105.551 bits/residue, 408 clashes 0 breaks t124-1b8jA at pool[25] 97.6756 bits/residue, 344 clashes 0 breaks t124-1bk7A at pool[26] 119.135 bits/residue, 592 clashes 0 breaks t124-1bk7A at pool[27] 104.935 bits/residue, 399 clashes 0 breaks t124-1bk7A at pool[28] 112.796 bits/residue, 373 clashes 0 breaks t124-1bkpA at pool[29] 114.416 bits/residue, 373 clashes 0 breaks t124-1bm8 at pool[30] 129.694 bits/residue, 361 clashes 0 breaks t124-1bs0A at pool[31] 124.098 bits/residue, 479 clashes 0 breaks t124-1bs0A at pool[32] 118.714 bits/residue, 219 clashes 0 breaks t124-1bs0A at pool[33] 116.577 bits/residue, 390 clashes 0 breaks t124-1bs0A at pool[34] 125.37 bits/residue, 220 clashes 0 breaks t124-1c3cA at pool[35] 120.399 bits/residue, 198 clashes 0 breaks t124-1c3cA at pool[36] 126.371 bits/residue, 209 clashes 0 breaks t124-1ccwB at pool[37] 105.422 bits/residue, 231 clashes 0 breaks t124-1ccwB at pool[38] 120.161 bits/residue, 218 clashes 0 breaks t124-1ccwB at pool[39] 127.798 bits/residue, 359 clashes 0 breaks t124-1cghA at pool[40] 131.4 bits/residue, 360 clashes 0 breaks t124-1chd at pool[41] 135.903 bits/residue, 405 clashes 0 breaks t124-1chmA at pool[42] 138.475 bits/residue, 417 clashes 0 breaks t124-1chmA at pool[43] 136.067 bits/residue, 430 clashes 0 breaks t124-1chmA at pool[44] 146.37 bits/residue, 601 clashes 0 breaks t124-1clxA at pool[45] 163.854 bits/residue, 822 clashes 0 breaks t124-1clxA at pool[46] 144.618 bits/residue, 492 clashes 0 breaks t124-1clxA at pool[47] 153.457 bits/residue, 682 clashes 0 breaks t124-1cmnA at pool[48] 144.613 bits/residue, 712 clashes 0 breaks t124-1cmnA at pool[49] 143.992 bits/residue, 725 clashes 0 breaks t124-1cmnA at pool[50] 145.674 bits/residue, 722 clashes 0 breaks t124-1cmnA at pool[51] 146.596 bits/residue, 723 clashes 0 breaks t124-1cmnA at pool[52] 146.047 bits/residue, 724 clashes 0 breaks t124-1cmnA at pool[53] 143.182 bits/residue, 710 clashes 0 breaks t124-1cqxA at pool[54] 149.235 bits/residue, 506 clashes 0 breaks t124-1cqxA at pool[55] 130.557 bits/residue, 600 clashes 0 breaks t124-1cv8 at pool[56] 131.927 bits/residue, 702 clashes 0 breaks t124-1cv8 at pool[57] 164.147 bits/residue, 840 clashes 0 breaks t124-1cv8 at pool[58] 132.243 bits/residue, 614 clashes 0 breaks t124-1dciA at pool[59] 145.378 bits/residue, 769 clashes 0 breaks t124-1dciA at pool[60] 149.899 bits/residue, 773 clashes 0 breaks t124-1dciA at pool[61] 131.511 bits/residue, 595 clashes 0 breaks t124-1dciA at pool[62] 139.458 bits/residue, 941 clashes 0 breaks t124-1dciA at pool[63] 139.038 bits/residue, 892 clashes 0 breaks t124-1dcs at pool[64] 143.587 bits/residue, 877 clashes 0 breaks t124-1dcs at pool[65] 166.802 bits/residue, 878 clashes 0 breaks t124-1dcs at pool[66] 195.652 bits/residue, 1449 clashes 0 breaks t124-1dcs at pool[67] 218.553 bits/residue, 1721 clashes 0 breaks t124-1dcs at pool[68] 191.718 bits/residue, 1279 clashes 0 breaks t124-1dcs at pool[69] 213.016 bits/residue, 1734 clashes 0 breaks t124-1dfmA at pool[70] 178.562 bits/residue, 1301 clashes 5.81537 breaks t124-1dfmA at pool[71] 172.664 bits/residue, 1062 clashes 0 breaks t124-1dgyA at pool[72] 172.762 bits/residue, 1062 clashes 0 breaks t124-1dozA at pool[73] 165.189 bits/residue, 944 clashes 0 breaks t124-1duzA at pool[74] 136.968 bits/residue, 499 clashes 0 breaks t124-1elrA at pool[75] 137.892 bits/residue, 453 clashes 0 breaks t124-1ezm at pool[76] 135.254 bits/residue, 426 clashes 0 breaks t124-1fce at pool[77] 133.13 bits/residue, 366 clashes 0 breaks t124-1fce at pool[78] 129.065 bits/residue, 355 clashes 0 breaks t124-1fce at pool[79] 134.59 bits/residue, 366 clashes 0 breaks t124-1fce at pool[80] 129.194 bits/residue, 364 clashes 0 breaks t124-1gca at pool[81] 123.208 bits/residue, 529 clashes 0 breaks t124-1hfc at pool[82] 128.067 bits/residue, 537 clashes 0 breaks t124-1hfc at pool[83] 148.313 bits/residue, 565 clashes 0 breaks t124-1hfc at pool[84] 122.454 bits/residue, 380 clashes 0 breaks t124-1htrB at pool[85] 114.711 bits/residue, 379 clashes 0 breaks t124-1lldA at pool[86] 132.337 bits/residue, 178 clashes 0 breaks t124-1mdl at pool[87] 120.687 bits/residue, 226 clashes 0 breaks t124-1mdl at pool[88] 130.814 bits/residue, 284 clashes 0 breaks t124-1mdl at pool[89] 136.538 bits/residue, 168 clashes 0 breaks t124-1mdl at pool[90] 119.032 bits/residue, 162 clashes 0 breaks t124-1mroA at pool[91] 120.102 bits/residue, 120 clashes 0 breaks t124-1mroA at pool[92] 133.624 bits/residue, 118 clashes 0 breaks t124-1mroC at pool[93] 116.401 bits/residue, 111 clashes 0 breaks t124-1mroC at pool[94] 103.843 bits/residue, 118 clashes 0 breaks t124-1mroC at pool[95] 130.59 bits/residue, 170 clashes 0 breaks t124-1mroC at pool[96] 141.168 bits/residue, 382 clashes 0 breaks t124-1mroC at pool[97] 134.466 bits/residue, 119 clashes 0 breaks t124-1msk at pool[98] 114.475 bits/residue, 110 clashes 0 breaks t124-1msk at pool[99] 126.429 bits/residue, 144 clashes 0 breaks t124-1nbaA at pool[100] 124.741 bits/residue, 182 clashes 0 breaks t124-1noa at pool[101] 120.432 bits/residue, 226 clashes 0 breaks t124-1noa at pool[102] 108.815 bits/residue, 160 clashes 0 breaks t124-1noa at pool[103] 135.013 bits/residue, 314 clashes 0 breaks t124-1nox at pool[104] 126.51 bits/residue, 260 clashes 0 breaks t124-1pda at pool[105] 136.505 bits/residue, 380 clashes 0 breaks t124-1pnkA at pool[106] 135.27 bits/residue, 435 clashes 0 breaks t124-1pnkA at pool[107] 135.837 bits/residue, 336 clashes 0 breaks t124-1pprM at pool[108] 138.71 bits/residue, 361 clashes 0 breaks t124-1qgiA at pool[109] 132.934 bits/residue, 388 clashes 0 breaks t124-1qgiA at pool[110] 135.626 bits/residue, 397 clashes 0 breaks t124-1qgiA at pool[111] 126.423 bits/residue, 404 clashes 0 breaks t124-1qgiA at pool[112] 151.379 bits/residue, 403 clashes 0 breaks t124-1qgiA at pool[113] 149.413 bits/residue, 316 clashes 0 breaks t124-1qhvA at pool[114] 139.375 bits/residue, 564 clashes 0 breaks t124-1qhvA at pool[115] 141.94 bits/residue, 326 clashes 0 breaks t124-1rie at pool[116] 151.707 bits/residue, 491 clashes 0 breaks t124-1ryc at pool[117] 128.252 bits/residue, 521 clashes 0 breaks t124-1shkA at pool[118] 132.13 bits/residue, 467 clashes 0 breaks t124-1sluA at pool[119] 133.198 bits/residue, 329 clashes 0 breaks t124-1svy at pool[120] 145.187 bits/residue, 333 clashes 0 breaks t124-1tl2A at pool[121] 151.821 bits/residue, 349 clashes 0 breaks t124-1vhh at pool[122] 141.016 bits/residue, 355 clashes 0 breaks t124-1vid at pool[123] 145.916 bits/residue, 314 clashes 0 breaks t124-1vom at pool[124] 146.231 bits/residue, 321 clashes 0 breaks t124-1vsrA at pool[125] 115.799 bits/residue, 332 clashes 0 breaks t124-2acy at pool[126] 118.334 bits/residue, 346 clashes 0 breaks t124-2acy at pool[127] 121.489 bits/residue, 298 clashes 0 breaks t124-2acy at pool[128] 125.677 bits/residue, 331 clashes 0 breaks t124-2acy at pool[129] 144.729 bits/residue, 308 clashes 0 breaks t124-2acy at pool[130] 130.37 bits/residue, 506 clashes 0 breaks t124-2acy at pool[131] 139.597 bits/residue, 317 clashes 0 breaks t124-2ae2A at pool[132] 142.76 bits/residue, 318 clashes 0 breaks t124-2dnjA at pool[133] 138.392 bits/residue, 318 clashes 0 breaks t124-2dnjA at pool[134] 141.588 bits/residue, 324 clashes 0 breaks t124-2dnjA at pool[135] 140.716 bits/residue, 319 clashes 0 breaks t124-2dnjA at pool[136] 138.818 bits/residue, 318 clashes 0 breaks t124-2dnjA at pool[137] 139.008 bits/residue, 363 clashes 0 breaks t124-2dnjA at pool[138] 138.879 bits/residue, 352 clashes 0 breaks t124-2sicI at pool[139] 158.292 bits/residue, 424 clashes 0 breaks t124-3lck at pool[140] 136.092 bits/residue, 463 clashes 0 breaks t124-3pcgA at pool[141] 130.117 bits/residue, 398 clashes 0 breaks t124-3pcgA at pool[142] 134.085 bits/residue, 416 clashes 0 breaks t124-4eugA at pool[143] 131.527 bits/residue, 420 clashes 0 breaks t124-7odcA at pool[144] 134.083 bits/residue, 467 clashes 0 breaks t124-init at pool[145] 140.246 bits/residue, 445 clashes 0 breaks # command:# Will do 20 iterations of optimization # best score in initial pool at pool[26] 28.6199 bits/residue, 192 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 22.7096 bits/residue, 138 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 1 ## CrossOver 0 ## CrossAndInsert 0 ## TwoFragment 1 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 43 ## ReduceBreak 0 # generation 2: best score 20.6364 bits/residue, 121 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 6 ## ReduceClash 4 ## CrossOver 0 ## CrossAndInsert 1 ## TwoFragment 5 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 79 ## ReduceBreak 0 # generation 3: best score 18.0589 bits/residue, 108 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 6 ## ReduceClash 8 ## CrossOver 0 ## CrossAndInsert 1 ## TwoFragment 7 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 122 ## ReduceBreak 0 # generation 4: best score 15.6986 bits/residue, 82 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 8 ## ReduceClash 9 ## CrossOver 1 ## CrossAndInsert 1 ## TwoFragment 7 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 165 ## ReduceBreak 0 # generation 5: best score 13.5668 bits/residue, 72 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 8 ## ReduceClash 12 ## CrossOver 1 ## CrossAndInsert 3 ## TwoFragment 9 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 206 ## ReduceBreak 0 # generation 6: best score 10.4647 bits/residue, 59 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 10 ## ReduceClash 13 ## CrossOver 1 ## CrossAndInsert 3 ## TwoFragment 9 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 251 ## ReduceBreak 0 # generation 7: best score 8.51317 bits/residue, 57 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 10 ## ReduceClash 15 ## CrossOver 1 ## CrossAndInsert 5 ## TwoFragment 9 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 293 ## ReduceBreak 0 # best score in initial pool at pool[47] 23.3389 bits/residue, 85 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 20.2069 bits/residue, 51 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 2 ## CrossOver 0 ## CrossAndInsert 2 ## TwoFragment 0 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 42 ## ReduceBreak 0 # generation 2: best score 17.2451 bits/residue, 29 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 3 ## CrossOver 0 ## CrossAndInsert 3 ## TwoFragment 1 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 84 ## ReduceBreak 0 # generation 3: best score 14.7718 bits/residue, 42 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 4 ## CrossOver 0 ## CrossAndInsert 3 ## TwoFragment 1 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 131 ## ReduceBreak 0 # generation 4: best score 12.9262 bits/residue, 66 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 6 ## CrossOver 0 ## CrossAndInsert 4 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 174 ## ReduceBreak 0 # generation 5: best score 10.2107 bits/residue, 54 clashes # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 7 ## CrossOver 0 ## CrossAndInsert 5 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 220 ## ReduceBreak 0 # generation 6: best score 8.86496 bits/residue, 51 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 5 ## ReduceClash 8 ## CrossOver 0 ## CrossAndInsert 5 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 267 ## ReduceBreak 0 # generation 7: best score 6.86256 bits/residue, 32 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 5 ## ReduceClash 10 ## CrossOver 0 ## CrossAndInsert 7 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 311 ## ReduceBreak 0 # best score in initial pool at pool[18] 39.088 bits/residue, 228 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 26.5124 bits/residue, 145 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 4 ## CrossOver 0 ## CrossAndInsert 0 ## TwoFragment 1 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 43 ## ReduceBreak 0 # generation 2: best score 20.6246 bits/residue, 103 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 6 ## CrossOver 0 ## CrossAndInsert 3 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 86 ## ReduceBreak 0 # generation 3: best score 18.4367 bits/residue, 61 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 8 ## CrossOver 0 ## CrossAndInsert 3 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 132 ## ReduceBreak 0 # generation 4: best score 15.2816 bits/residue, 61 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 8 ## CrossOver 0 ## CrossAndInsert 4 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 180 ## ReduceBreak 0 # generation 5: best score 13.0903 bits/residue, 40 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 11 ## CrossOver 0 ## CrossAndInsert 7 ## TwoFragment 3 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 220 ## ReduceBreak 0 # generation 6: best score 10.3824 bits/residue, 40 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 13 ## CrossOver 0 ## CrossAndInsert 10 ## TwoFragment 3 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 263 ## ReduceBreak 0 # generation 7: best score 6.99712 bits/residue, 63 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 16 ## CrossOver 0 ## CrossAndInsert 12 ## TwoFragment 4 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 304 ## ReduceBreak 0 # best score in initial pool at pool[14] 35.5489 bits/residue, 242 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 26.4155 bits/residue, 147 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 0 ## CrossOver 0 ## CrossAndInsert 2 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 45 ## ReduceBreak 0 # generation 2: best score 21.4552 bits/residue, 155 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 2 ## CrossOver 0 ## CrossAndInsert 3 ## TwoFragment 4 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 87 ## ReduceBreak 0 # generation 3: best score 17.7823 bits/residue, 110 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 3 ## CrossOver 0 ## CrossAndInsert 6 ## TwoFragment 5 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 127 ## ReduceBreak 0 # generation 4: best score 14.245 bits/residue, 74 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 5 ## CrossOver 0 ## CrossAndInsert 10 ## TwoFragment 6 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 167 ## ReduceBreak 0 # generation 5: best score 11.9285 bits/residue, 37 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 7 ## CrossOver 0 ## CrossAndInsert 11 ## TwoFragment 8 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 207 ## ReduceBreak 0 # generation 6: best score 10.7058 bits/residue, 55 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 9 ## CrossOver 0 ## CrossAndInsert 13 ## TwoFragment 9 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 248 ## ReduceBreak 0 # generation 7: best score 9.10814 bits/residue, 61 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 13 ## CrossOver 0 ## CrossAndInsert 14 ## TwoFragment 9 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 290 ## ReduceBreak 0 # best score in initial pool at pool[4] 34.0944 bits/residue, 185 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 27.4503 bits/residue, 142 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 1 ## CrossOver 0 ## CrossAndInsert 1 ## TwoFragment 0 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 46 ## ReduceBreak 0 # generation 2: best score 24.6913 bits/residue, 112 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 1 ## CrossOver 0 ## CrossAndInsert 1 ## TwoFragment 0 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 95 ## ReduceBreak 0 # generation 3: best score 20.1641 bits/residue, 68 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 2 ## CrossOver 0 ## CrossAndInsert 2 ## TwoFragment 1 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 142 ## ReduceBreak 0 # generation 4: best score 15.7845 bits/residue, 86 clashes # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 4 ## CrossOver 0 ## CrossAndInsert 6 ## TwoFragment 1 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 183 ## ReduceBreak 0 # generation 5: best score 14.758 bits/residue, 63 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 5 ## CrossOver 0 ## CrossAndInsert 7 ## TwoFragment 1 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 227 ## ReduceBreak 0 # generation 6: best score 11.4818 bits/residue, 64 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 7 ## CrossOver 0 ## CrossAndInsert 10 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 270 ## ReduceBreak 0 # generation 7: best score 8.49852 bits/residue, 37 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 10 ## CrossOver 0 ## CrossAndInsert 12 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 313 ## ReduceBreak 0 # best score in initial pool at pool[38] 37.6971 bits/residue, 238 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 27.1098 bits/residue, 158 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 2 ## CrossOver 0 ## CrossAndInsert 1 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 43 ## ReduceBreak 0 # generation 2: best score 23.1733 bits/residue, 128 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 2 ## ReduceClash 6 ## CrossOver 0 ## CrossAndInsert 1 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 87 ## ReduceBreak 0 # generation 3: best score 19.1339 bits/residue, 78 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 10 ## CrossOver 0 ## CrossAndInsert 2 ## TwoFragment 3 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 129 ## ReduceBreak 0 # generation 4: best score 15.8357 bits/residue, 42 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 13 ## CrossOver 0 ## CrossAndInsert 6 ## TwoFragment 3 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 169 ## ReduceBreak 0 # generation 5: best score 14.2275 bits/residue, 42 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 5 ## ReduceClash 16 ## CrossOver 0 ## CrossAndInsert 7 ## TwoFragment 6 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 210 ## ReduceBreak 0 # generation 6: best score 11.3521 bits/residue, 38 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 5 ## ReduceClash 19 ## CrossOver 0 ## CrossAndInsert 9 ## TwoFragment 7 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 252 ## ReduceBreak 0 # generation 7: best score 8.90722 bits/residue, 32 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 6 ## ReduceClash 26 ## CrossOver 0 ## CrossAndInsert 9 ## TwoFragment 7 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 292 ## ReduceBreak 0 # best score in initial pool at pool[43] 24.5137 bits/residue, 161 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 20.6195 bits/residue, 121 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 2 ## CrossOver 0 ## CrossAndInsert 2 ## TwoFragment 0 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 43 ## ReduceBreak 0 # generation 2: best score 16.1826 bits/residue, 57 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 4 ## CrossOver 0 ## CrossAndInsert 3 ## TwoFragment 0 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 89 ## ReduceBreak 0 # generation 3: best score 15.0413 bits/residue, 59 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 2 ## ReduceClash 7 ## CrossOver 0 ## CrossAndInsert 5 ## TwoFragment 3 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 129 ## ReduceBreak 0 # generation 4: best score 11.5031 bits/residue, 67 clashes # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 8 ## CrossOver 0 ## CrossAndInsert 7 ## TwoFragment 4 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 172 ## ReduceBreak 0 # generation 5: best score 9.50727 bits/residue, 38 clashes # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 10 ## CrossOver 0 ## CrossAndInsert 11 ## TwoFragment 4 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 215 ## ReduceBreak 0 # generation 6: best score 7.94124 bits/residue, 61 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 12 ## CrossOver 0 ## CrossAndInsert 13 ## TwoFragment 6 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 256 ## ReduceBreak 0 # generation 7: best score 6.13159 bits/residue, 31 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 5 ## ReduceClash 16 ## CrossOver 0 ## CrossAndInsert 13 ## TwoFragment 7 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 297 ## ReduceBreak 0 # best score in initial pool at pool[16] 31.6464 bits/residue, 188 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 26.7714 bits/residue, 145 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 2 ## CrossOver 0 ## CrossAndInsert 1 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 43 ## ReduceBreak 0 # generation 2: best score 23.9839 bits/residue, 130 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 5 ## CrossOver 0 ## CrossAndInsert 3 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 84 ## ReduceBreak 0 # generation 3: best score 15.8377 bits/residue, 67 clashes # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 7 ## CrossOver 0 ## CrossAndInsert 5 ## TwoFragment 4 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 127 ## ReduceBreak 0 # generation 4: best score 13.3527 bits/residue, 42 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 7 ## CrossOver 0 ## CrossAndInsert 6 ## TwoFragment 4 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 174 ## ReduceBreak 0 # generation 5: best score 10.9389 bits/residue, 25 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 8 ## CrossOver 0 ## CrossAndInsert 6 ## TwoFragment 5 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 218 ## ReduceBreak 0 # generation 6: best score 9.65681 bits/residue, 12 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 9 ## CrossOver 0 ## CrossAndInsert 6 ## TwoFragment 7 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 262 ## ReduceBreak 0 # generation 7: best score 8.4084 bits/residue, 25 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 11 ## CrossOver 0 ## CrossAndInsert 7 ## TwoFragment 10 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 301 ## ReduceBreak 0 # best score in initial pool at pool[37] 29.3788 bits/residue, 192 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 21.8184 bits/residue, 105 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 2 ## CrossOver 0 ## CrossAndInsert 2 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 42 ## ReduceBreak 0 # generation 2: best score 18.0039 bits/residue, 30 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 2 ## CrossOver 0 ## CrossAndInsert 3 ## TwoFragment 4 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 87 ## ReduceBreak 0 # generation 3: best score 13.0131 bits/residue, 69 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 3 ## CrossOver 0 ## CrossAndInsert 3 ## TwoFragment 5 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 133 ## ReduceBreak 0 # generation 4: best score 10.1511 bits/residue, 21 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 5 ## CrossOver 0 ## CrossAndInsert 3 ## TwoFragment 5 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 176 ## ReduceBreak 0 # generation 5: best score 7.45219 bits/residue, 23 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 6 ## CrossOver 0 ## CrossAndInsert 4 ## TwoFragment 6 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 219 ## ReduceBreak 0 # generation 6: best score 4.97212 bits/residue, 21 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 6 ## CrossOver 0 ## CrossAndInsert 4 ## TwoFragment 9 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 264 ## ReduceBreak 0 # generation 7: best score 3.69587 bits/residue, 21 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 6 ## CrossOver 0 ## CrossAndInsert 6 ## TwoFragment 10 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 306 ## ReduceBreak 0 # best score in initial pool at pool[49] 30.0471 bits/residue, 236 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 26.8385 bits/residue, 148 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 1 ## CrossOver 0 ## CrossAndInsert 2 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 42 ## ReduceBreak 0 # generation 2: best score 23.5573 bits/residue, 137 clashes # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 4 ## CrossOver 0 ## CrossAndInsert 5 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 85 ## ReduceBreak 0 # generation 3: best score 21.0387 bits/residue, 177 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 2 ## ReduceClash 7 ## CrossOver 1 ## CrossAndInsert 5 ## TwoFragment 6 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 124 ## ReduceBreak 0 # generation 4: best score 18.4698 bits/residue, 112 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 2 ## ReduceClash 9 ## CrossOver 1 ## CrossAndInsert 5 ## TwoFragment 8 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 170 ## ReduceBreak 0 # generation 5: best score 14.6988 bits/residue, 121 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 17 ## CrossOver 2 ## CrossAndInsert 6 ## TwoFragment 9 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 208 ## ReduceBreak 0 # generation 6: best score 9.95946 bits/residue, 105 clashes # Cumulative usage by method: ## InsertFragment 6 ## ReduceClash 20 ## CrossOver 2 ## CrossAndInsert 8 ## TwoFragment 10 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 248 ## ReduceBreak 0 # generation 7: best score 7.70703 bits/residue, 69 clashes # Cumulative usage by method: ## InsertFragment 7 ## ReduceClash 25 ## CrossOver 2 ## CrossAndInsert 10 ## TwoFragment 10 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 288 ## ReduceBreak 0 # best score in initial pool at pool[18] 29.7451 bits/residue, 188 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 24.821 bits/residue, 154 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 1 ## CrossOver 0 ## CrossAndInsert 0 ## TwoFragment 1 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 47 ## ReduceBreak 0 # generation 2: best score 20.523 bits/residue, 85 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 4 ## CrossOver 0 ## CrossAndInsert 2 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 89 ## ReduceBreak 0 # generation 3: best score 16.205 bits/residue, 39 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 6 ## CrossOver 0 ## CrossAndInsert 6 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 129 ## ReduceBreak 0 # generation 4: best score 14.5034 bits/residue, 44 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 10 ## CrossOver 0 ## CrossAndInsert 7 ## TwoFragment 4 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 170 ## ReduceBreak 0 # generation 5: best score 12.0185 bits/residue, 38 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 13 ## CrossOver 0 ## CrossAndInsert 11 ## TwoFragment 7 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 205 ## ReduceBreak 0 # generation 6: best score 9.85684 bits/residue, 38 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 14 ## CrossOver 0 ## CrossAndInsert 11 ## TwoFragment 9 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 251 ## ReduceBreak 0 # generation 7: best score 7.10404 bits/residue, 40 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 5 ## ReduceClash 15 ## CrossOver 0 ## CrossAndInsert 12 ## TwoFragment 10 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 290 ## ReduceBreak 0 # best score in initial pool at pool[14] 32.0318 bits/residue, 217 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 28.0745 bits/residue, 178 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 1 ## CrossOver 0 ## CrossAndInsert 0 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 42 ## ReduceBreak 0 # generation 2: best score 21.2456 bits/residue, 98 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 2 ## CrossOver 0 ## CrossAndInsert 0 ## TwoFragment 5 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 88 ## ReduceBreak 0 # generation 3: best score 17.9385 bits/residue, 65 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 4 ## CrossOver 0 ## CrossAndInsert 0 ## TwoFragment 6 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 132 ## ReduceBreak 0 # generation 4: best score 14.1645 bits/residue, 43 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 11 ## CrossOver 0 ## CrossAndInsert 1 ## TwoFragment 8 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 168 ## ReduceBreak 0 # generation 5: best score 11.3106 bits/residue, 35 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 15 ## CrossOver 0 ## CrossAndInsert 3 ## TwoFragment 10 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 207 ## ReduceBreak 0 # generation 6: best score 9.9442 bits/residue, 37 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 20 ## CrossOver 0 ## CrossAndInsert 5 ## TwoFragment 14 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 244 ## ReduceBreak 0 # generation 7: best score 6.98476 bits/residue, 20 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 5 ## ReduceClash 27 ## CrossOver 0 ## CrossAndInsert 7 ## TwoFragment 17 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 278 ## ReduceBreak 0 # best score in initial pool at pool[29] 37.9953 bits/residue, 251 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 32.3375 bits/residue, 186 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 2 ## CrossOver 0 ## CrossAndInsert 0 ## TwoFragment 1 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 45 ## ReduceBreak 0 # generation 2: best score 23.756 bits/residue, 149 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 2 ## CrossOver 0 ## CrossAndInsert 2 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 91 ## ReduceBreak 0 # generation 3: best score 18.1349 bits/residue, 83 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 3 ## CrossOver 0 ## CrossAndInsert 5 ## TwoFragment 3 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 135 ## ReduceBreak 0 # generation 4: best score 12.6975 bits/residue, 37 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 3 ## CrossOver 0 ## CrossAndInsert 6 ## TwoFragment 3 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 182 ## ReduceBreak 0 # generation 5: best score 11.406 bits/residue, 24 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 2 ## ReduceClash 4 ## CrossOver 0 ## CrossAndInsert 7 ## TwoFragment 3 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 227 ## ReduceBreak 0 # generation 6: best score 8.79631 bits/residue, 24 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 5 ## CrossOver 0 ## CrossAndInsert 7 ## TwoFragment 3 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 273 ## ReduceBreak 0 # generation 7: best score 6.42033 bits/residue, 35 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 5 ## CrossOver 0 ## CrossAndInsert 7 ## TwoFragment 3 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 319 ## ReduceBreak 0 # best score in initial pool at pool[31] 40.5882 bits/residue, 277 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 30.3525 bits/residue, 185 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 1 ## CrossOver 0 ## CrossAndInsert 1 ## TwoFragment 5 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 39 ## ReduceBreak 0 # generation 2: best score 24.2327 bits/residue, 132 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 2 ## ReduceClash 2 ## CrossOver 0 ## CrossAndInsert 3 ## TwoFragment 7 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 81 ## ReduceBreak 0 # generation 3: best score 20.65 bits/residue, 114 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 5 ## CrossOver 0 ## CrossAndInsert 4 ## TwoFragment 9 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 122 ## ReduceBreak 0 # generation 4: best score 17.2276 bits/residue, 113 clashes # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 7 ## CrossOver 0 ## CrossAndInsert 5 ## TwoFragment 9 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 167 ## ReduceBreak 0 # generation 5: best score 15.429 bits/residue, 58 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 8 ## CrossOver 0 ## CrossAndInsert 6 ## TwoFragment 13 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 209 ## ReduceBreak 0 # generation 6: best score 12.6074 bits/residue, 66 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 5 ## ReduceClash 9 ## CrossOver 0 ## CrossAndInsert 6 ## TwoFragment 16 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 251 ## ReduceBreak 0 # generation 7: best score 9.4354 bits/residue, 25 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 8 ## ReduceClash 9 ## CrossOver 0 ## CrossAndInsert 7 ## TwoFragment 17 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 293 ## ReduceBreak 0 # best score in initial pool at pool[1] 58.576 bits/residue, 413 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 41.3025 bits/residue, 280 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 1 ## CrossOver 0 ## CrossAndInsert 1 ## TwoFragment 0 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 48 ## ReduceBreak 0 # generation 2: best score 31.3952 bits/residue, 222 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 2 ## CrossOver 0 ## CrossAndInsert 3 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 92 ## ReduceBreak 0 # generation 3: best score 24.6443 bits/residue, 164 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 3 ## CrossOver 0 ## CrossAndInsert 4 ## TwoFragment 3 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 136 ## ReduceBreak 0 # generation 4: best score 18.0547 bits/residue, 80 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 4 ## CrossOver 0 ## CrossAndInsert 4 ## TwoFragment 5 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 182 ## ReduceBreak 0 # generation 5: best score 15.5515 bits/residue, 70 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 6 ## CrossOver 0 ## CrossAndInsert 5 ## TwoFragment 7 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 224 ## ReduceBreak 0 # generation 6: best score 12.9149 bits/residue, 77 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 2 ## ReduceClash 7 ## CrossOver 0 ## CrossAndInsert 5 ## TwoFragment 9 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 267 ## ReduceBreak 0 # generation 7: best score 10.198 bits/residue, 48 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 2 ## ReduceClash 7 ## CrossOver 0 ## CrossAndInsert 5 ## TwoFragment 9 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 315 ## ReduceBreak 0 # best score in initial pool at pool[43] 30.0241 bits/residue, 168 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 25.9984 bits/residue, 138 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 1 ## CrossOver 0 ## CrossAndInsert 2 ## TwoFragment 0 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 44 ## ReduceBreak 0 # generation 2: best score 22.4294 bits/residue, 96 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 4 ## CrossOver 0 ## CrossAndInsert 2 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 88 ## ReduceBreak 0 # generation 3: best score 19.528 bits/residue, 66 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 5 ## CrossOver 0 ## CrossAndInsert 4 ## TwoFragment 3 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 130 ## ReduceBreak 0 # generation 4: best score 16.9971 bits/residue, 69 clashes # Cumulative usage by method: ## InsertFragment 5 ## ReduceClash 5 ## CrossOver 0 ## CrossAndInsert 7 ## TwoFragment 6 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 171 ## ReduceBreak 0 # generation 5: best score 14.1305 bits/residue, 25 clashes # Cumulative usage by method: ## InsertFragment 8 ## ReduceClash 5 ## CrossOver 0 ## CrossAndInsert 10 ## TwoFragment 8 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 211 ## ReduceBreak 0 # generation 6: best score 11.7644 bits/residue, 28 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 8 ## ReduceClash 6 ## CrossOver 0 ## CrossAndInsert 14 ## TwoFragment 8 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 254 ## ReduceBreak 0 # generation 7: best score 9.41866 bits/residue, 29 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 9 ## ReduceClash 8 ## CrossOver 0 ## CrossAndInsert 17 ## TwoFragment 9 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 294 ## ReduceBreak 0 # best score in initial pool at pool[21] 37.7408 bits/residue, 320 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 33.7557 bits/residue, 259 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 2 ## CrossOver 0 ## CrossAndInsert 1 ## TwoFragment 0 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 46 ## ReduceBreak 0 # generation 2: best score 27.2823 bits/residue, 207 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 3 ## CrossOver 0 ## CrossAndInsert 4 ## TwoFragment 1 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 91 ## ReduceBreak 0 # generation 3: best score 21.4191 bits/residue, 150 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 3 ## CrossOver 0 ## CrossAndInsert 4 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 138 ## ReduceBreak 0 # generation 4: best score 17.835 bits/residue, 124 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 2 ## ReduceClash 3 ## CrossOver 0 ## CrossAndInsert 4 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 185 ## ReduceBreak 0 # generation 5: best score 15.2018 bits/residue, 61 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 2 ## ReduceClash 5 ## CrossOver 0 ## CrossAndInsert 6 ## TwoFragment 4 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 227 ## ReduceBreak 0 # generation 6: best score 12.8626 bits/residue, 70 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 2 ## ReduceClash 8 ## CrossOver 0 ## CrossAndInsert 9 ## TwoFragment 5 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 269 ## ReduceBreak 0 # generation 7: best score 10.6014 bits/residue, 75 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 2 ## ReduceClash 10 ## CrossOver 0 ## CrossAndInsert 10 ## TwoFragment 5 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 313 ## ReduceBreak 0 # best score in initial pool at pool[22] 38.278 bits/residue, 272 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 31.1442 bits/residue, 208 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 0 ## ReduceClash 0 ## CrossOver 0 ## CrossAndInsert 0 ## TwoFragment 3 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 46 ## ReduceBreak 0 # generation 2: best score 22.8489 bits/residue, 109 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 2 ## ReduceClash 2 ## CrossOver 0 ## CrossAndInsert 2 ## TwoFragment 3 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 88 ## ReduceBreak 0 # generation 3: best score 19.0568 bits/residue, 41 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 2 ## ReduceClash 2 ## CrossOver 0 ## CrossAndInsert 2 ## TwoFragment 4 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 136 ## ReduceBreak 0 # generation 4: best score 17.7964 bits/residue, 43 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 4 ## CrossOver 0 ## CrossAndInsert 3 ## TwoFragment 5 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 178 ## ReduceBreak 0 # generation 5: best score 15.7378 bits/residue, 48 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 5 ## ReduceClash 5 ## CrossOver 0 ## CrossAndInsert 4 ## TwoFragment 8 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 218 ## ReduceBreak 0 # generation 6: best score 13.5197 bits/residue, 49 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 7 ## ReduceClash 6 ## CrossOver 0 ## CrossAndInsert 4 ## TwoFragment 11 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 260 ## ReduceBreak 0 # generation 7: best score 12.0213 bits/residue, 39 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 10 ## ReduceClash 6 ## CrossOver 0 ## CrossAndInsert 4 ## TwoFragment 13 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 303 ## ReduceBreak 0 # best score in initial pool at pool[25] 29.8654 bits/residue, 199 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 24.0404 bits/residue, 114 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 0 ## CrossOver 0 ## CrossAndInsert 0 ## TwoFragment 0 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 47 ## ReduceBreak 0 # generation 2: best score 18.4619 bits/residue, 79 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 2 ## CrossOver 0 ## CrossAndInsert 0 ## TwoFragment 1 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 93 ## ReduceBreak 0 # generation 3: best score 15.487 bits/residue, 80 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 2 ## CrossOver 1 ## CrossAndInsert 3 ## TwoFragment 1 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 137 ## ReduceBreak 0 # generation 4: best score 12.4439 bits/residue, 82 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 3 ## CrossOver 1 ## CrossAndInsert 3 ## TwoFragment 2 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 184 ## ReduceBreak 0 # generation 5: best score 9.95806 bits/residue, 65 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 3 ## ReduceClash 4 ## CrossOver 1 ## CrossAndInsert 3 ## TwoFragment 4 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 227 ## ReduceBreak 0 # generation 6: best score 7.20151 bits/residue, 53 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 4 ## CrossOver 1 ## CrossAndInsert 4 ## TwoFragment 5 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 272 ## ReduceBreak 0 # generation 7: best score 4.14798 bits/residue, 53 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 5 ## ReduceClash 5 ## CrossOver 1 ## CrossAndInsert 5 ## TwoFragment 5 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 317 ## ReduceBreak 0 # best score in initial pool at pool[41] 25.4651 bits/residue, 167 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 20.1445 bits/residue, 123 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 1 ## CrossOver 0 ## CrossAndInsert 1 ## TwoFragment 1 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 44 ## ReduceBreak 0 # generation 2: best score 16.2912 bits/residue, 77 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 1 ## ReduceClash 1 ## CrossOver 0 ## CrossAndInsert 3 ## TwoFragment 4 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 87 ## ReduceBreak 0 # generation 3: best score 13.2254 bits/residue, 65 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 2 ## ReduceClash 2 ## CrossOver 0 ## CrossAndInsert 3 ## TwoFragment 4 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 133 ## ReduceBreak 0 # generation 4: best score 11.0745 bits/residue, 64 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 6 ## CrossOver 0 ## CrossAndInsert 6 ## TwoFragment 7 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 169 ## ReduceBreak 0 # generation 5: best score 9.02715 bits/residue, 57 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 5 ## ReduceClash 7 ## CrossOver 0 ## CrossAndInsert 8 ## TwoFragment 11 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 209 ## ReduceBreak 0 # generation 6: best score 6.8581 bits/residue, 57 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 6 ## ReduceClash 8 ## CrossOver 0 ## CrossAndInsert 9 ## TwoFragment 12 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 252 ## ReduceBreak 0 # generation 7: best score 4.27375 bits/residue, 33 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 8 ## ReduceClash 11 ## CrossOver 0 ## CrossAndInsert 11 ## TwoFragment 13 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 288 ## ReduceBreak 0 # best score in super_pool at pool[8] 3.69587 bits/residue, 21 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 300 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 2.08025 bits/residue, 40 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 0 ## CrossOver 0 ## CrossAndInsert 1 ## TwoFragment 4 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 38 ## ReduceBreak 0 # generation 2: best score 0.333072 bits/residue, 36 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 5 ## ReduceClash 1 ## CrossOver 0 ## CrossAndInsert 1 ## TwoFragment 4 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 83 ## ReduceBreak 0 # generation 3: best score -1.04558 bits/residue, 21 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 7 ## ReduceClash 3 ## CrossOver 0 ## CrossAndInsert 1 ## TwoFragment 8 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 120 ## ReduceBreak 0 # generation 4: best score -2.38968 bits/residue, 34 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 9 ## ReduceClash 6 ## CrossOver 0 ## CrossAndInsert 3 ## TwoFragment 10 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 154 ## ReduceBreak 0 # generation 5: best score -3.1483 bits/residue, 18 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 9 ## ReduceClash 11 ## CrossOver 0 ## CrossAndInsert 7 ## TwoFragment 12 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 189 ## ReduceBreak 0 # generation 6: best score -4.79303 bits/residue, 29 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 9 ## ReduceClash 12 ## CrossOver 0 ## CrossAndInsert 9 ## TwoFragment 13 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 231 ## ReduceBreak 0 # generation 7: best score -7.47252 bits/residue, 14 clashes # Cumulative usage by method: ## InsertFragment 10 ## ReduceClash 14 ## CrossOver 0 ## CrossAndInsert 15 ## TwoFragment 14 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 268 ## ReduceBreak 0 # command:# naming current conformation t124-opt # command:# command:# Optimizing rotamers with 10 blocks of 50 conformations # P(change) = 0.9 * 0.9^ iter # P(new) = 0.5 * 0.95^ iter # P(neighbor) = 0.5 * 0.95^ iter # P(archetype) = 0.9 * 0.9^ iter # P(best_residue) = 0.9 * 0.9^ iter # clash penalty 10 nats/clash # ss_bond bonus 10 # sidechain weight 5 # best score from archetype iter: -7.47252 bits/residue, 14 clashes, rmsd= 0 # best score after iter 1 -7.47252 bits/residue, 14 clashes, rmsd= 0 # best score after iter 2 -7.92201 bits/residue, 12 clashes, rmsd= 0 # best score after iter 3 -10.5084 bits/residue, 15 clashes, rmsd= 0 # best score after iter 4 -11.8383 bits/residue, 13 clashes, rmsd= 0 # best score after iter 5 -12.5934 bits/residue, 7 clashes, rmsd= 0 # best score after iter 6 -12.8884 bits/residue, 6 clashes, rmsd= 0 # best score after iter 7 -13.2171 bits/residue, 5 clashes, rmsd= 0 # best score after iter 8 -13.2821 bits/residue, 6 clashes, rmsd= 0 # best score after iter 9 -13.4408 bits/residue, 6 clashes, rmsd= 0 # command:# naming current conformation 124-opt-rot # command:# command:# ScwrlConform produces command scwrl -i /projects/compbio/tmp/to_scwrl_1756480512.pdb -s /projects/compbio/tmp/to_scwrl_1756480512.seq -o /projects/compbio/tmp/from_scwrl_1756480512.pdb > /projects/compbio/tmp/scwrl.log # conformation set from SCWRL output # command:# naming current conformation t124-opt-scwrl # command:# command:# ScoreConform t124-rand 53.4358 bits/residue, 515 clashes t124-119l at pool[1] 138.941 bits/residue, 497 clashes 0 breaks t124-119l at pool[2] 124.77 bits/residue, 542 clashes 0 breaks t124-1a8i at pool[3] 150.563 bits/residue, 826 clashes 0 breaks t124-1a8i at pool[4] 88.3089 bits/residue, 486 clashes 0 breaks t124-1a8l at pool[5] 105.557 bits/residue, 483 clashes 0 breaks t124-1a8l at pool[6] 114.655 bits/residue, 533 clashes 0 breaks t124-1a8l at pool[7] 101.865 bits/residue, 482 clashes 0 breaks t124-1a8l at pool[8] 105.026 bits/residue, 519 clashes 0 breaks t124-1a8l at pool[9] 109 bits/residue, 512 clashes 0 breaks t124-1a8l at pool[10] 118.913 bits/residue, 514 clashes 0 breaks t124-1a8l at pool[11] 111.651 bits/residue, 612 clashes 0 breaks t124-1adoA at pool[12] 107.355 bits/residue, 580 clashes 0 breaks t124-1amp at pool[13] 106.215 bits/residue, 600 clashes 0 breaks t124-1amp at pool[14] 104.812 bits/residue, 551 clashes 0 breaks t124-1amp at pool[15] 108.248 bits/residue, 594 clashes 0 breaks t124-1atzA at pool[16] 109.562 bits/residue, 534 clashes 0 breaks t124-1b6a at pool[17] 93.6398 bits/residue, 457 clashes 0 breaks t124-1b6a at pool[18] 103.885 bits/residue, 451 clashes 0 breaks t124-1b8aA at pool[19] 100.236 bits/residue, 362 clashes 0 breaks t124-1b8aA at pool[20] 111.854 bits/residue, 475 clashes 0 breaks t124-1b8aA at pool[21] 93.7848 bits/residue, 382 clashes 0 breaks t124-1b8jA at pool[22] 104.346 bits/residue, 360 clashes 0 breaks t124-1b8jA at pool[23] 113.835 bits/residue, 454 clashes 0 breaks t124-1b8jA at pool[24] 105.551 bits/residue, 408 clashes 0 breaks t124-1b8jA at pool[25] 97.6756 bits/residue, 344 clashes 0 breaks t124-1bk7A at pool[26] 119.135 bits/residue, 592 clashes 0 breaks t124-1bk7A at pool[27] 104.935 bits/residue, 399 clashes 0 breaks t124-1bk7A at pool[28] 112.796 bits/residue, 373 clashes 0 breaks t124-1bkpA at pool[29] 114.416 bits/residue, 373 clashes 0 breaks t124-1bm8 at pool[30] 129.694 bits/residue, 361 clashes 0 breaks t124-1bs0A at pool[31] 124.098 bits/residue, 479 clashes 0 breaks t124-1bs0A at pool[32] 118.714 bits/residue, 219 clashes 0 breaks t124-1bs0A at pool[33] 116.577 bits/residue, 390 clashes 0 breaks t124-1bs0A at pool[34] 125.37 bits/residue, 220 clashes 0 breaks t124-1c3cA at pool[35] 120.399 bits/residue, 198 clashes 0 breaks t124-1c3cA at pool[36] 126.371 bits/residue, 209 clashes 0 breaks t124-1ccwB at pool[37] 105.422 bits/residue, 231 clashes 0 breaks t124-1ccwB at pool[38] 120.161 bits/residue, 218 clashes 0 breaks t124-1ccwB at pool[39] 127.798 bits/residue, 359 clashes 0 breaks t124-1cghA at pool[40] 131.4 bits/residue, 360 clashes 0 breaks t124-1chd at pool[41] 135.903 bits/residue, 405 clashes 0 breaks t124-1chmA at pool[42] 138.475 bits/residue, 417 clashes 0 breaks t124-1chmA at pool[43] 136.067 bits/residue, 430 clashes 0 breaks t124-1chmA at pool[44] 146.37 bits/residue, 601 clashes 0 breaks t124-1clxA at pool[45] 163.854 bits/residue, 822 clashes 0 breaks t124-1clxA at pool[46] 144.618 bits/residue, 492 clashes 0 breaks t124-1clxA at pool[47] 153.457 bits/residue, 682 clashes 0 breaks t124-1cmnA at pool[48] 144.613 bits/residue, 712 clashes 0 breaks t124-1cmnA at pool[49] 143.992 bits/residue, 725 clashes 0 breaks t124-1cmnA at pool[50] 145.674 bits/residue, 722 clashes 0 breaks t124-1cmnA at pool[51] 146.596 bits/residue, 723 clashes 0 breaks t124-1cmnA at pool[52] 146.047 bits/residue, 724 clashes 0 breaks t124-1cmnA at pool[53] 143.182 bits/residue, 710 clashes 0 breaks t124-1cqxA at pool[54] 149.235 bits/residue, 506 clashes 0 breaks t124-1cqxA at pool[55] 130.557 bits/residue, 600 clashes 0 breaks t124-1cv8 at pool[56] 131.927 bits/residue, 702 clashes 0 breaks t124-1cv8 at pool[57] 164.147 bits/residue, 840 clashes 0 breaks t124-1cv8 at pool[58] 132.243 bits/residue, 614 clashes 0 breaks t124-1dciA at pool[59] 145.378 bits/residue, 769 clashes 0 breaks t124-1dciA at pool[60] 149.899 bits/residue, 773 clashes 0 breaks t124-1dciA at pool[61] 131.511 bits/residue, 595 clashes 0 breaks t124-1dciA at pool[62] 139.458 bits/residue, 941 clashes 0 breaks t124-1dciA at pool[63] 139.038 bits/residue, 892 clashes 0 breaks t124-1dcs at pool[64] 143.587 bits/residue, 877 clashes 0 breaks t124-1dcs at pool[65] 166.802 bits/residue, 878 clashes 0 breaks t124-1dcs at pool[66] 195.652 bits/residue, 1449 clashes 0 breaks t124-1dcs at pool[67] 218.553 bits/residue, 1721 clashes 0 breaks t124-1dcs at pool[68] 191.718 bits/residue, 1279 clashes 0 breaks t124-1dcs at pool[69] 213.016 bits/residue, 1734 clashes 0 breaks t124-1dfmA at pool[70] 178.562 bits/residue, 1301 clashes 5.81537 breaks t124-1dfmA at pool[71] 172.664 bits/residue, 1062 clashes 0 breaks t124-1dgyA at pool[72] 172.762 bits/residue, 1062 clashes 0 breaks t124-1dozA at pool[73] 165.189 bits/residue, 944 clashes 0 breaks t124-1duzA at pool[74] 136.968 bits/residue, 499 clashes 0 breaks t124-1elrA at pool[75] 137.892 bits/residue, 453 clashes 0 breaks t124-1ezm at pool[76] 135.254 bits/residue, 426 clashes 0 breaks t124-1fce at pool[77] 133.13 bits/residue, 366 clashes 0 breaks t124-1fce at pool[78] 129.065 bits/residue, 355 clashes 0 breaks t124-1fce at pool[79] 134.59 bits/residue, 366 clashes 0 breaks t124-1fce at pool[80] 129.194 bits/residue, 364 clashes 0 breaks t124-1gca at pool[81] 123.208 bits/residue, 529 clashes 0 breaks t124-1hfc at pool[82] 128.067 bits/residue, 537 clashes 0 breaks t124-1hfc at pool[83] 148.313 bits/residue, 565 clashes 0 breaks t124-1hfc at pool[84] 122.454 bits/residue, 380 clashes 0 breaks t124-1htrB at pool[85] 114.711 bits/residue, 379 clashes 0 breaks t124-1lldA at pool[86] 132.337 bits/residue, 178 clashes 0 breaks t124-1mdl at pool[87] 120.687 bits/residue, 226 clashes 0 breaks t124-1mdl at pool[88] 130.814 bits/residue, 284 clashes 0 breaks t124-1mdl at pool[89] 136.538 bits/residue, 168 clashes 0 breaks t124-1mdl at pool[90] 119.032 bits/residue, 162 clashes 0 breaks t124-1mroA at pool[91] 120.102 bits/residue, 120 clashes 0 breaks t124-1mroA at pool[92] 133.624 bits/residue, 118 clashes 0 breaks t124-1mroC at pool[93] 116.401 bits/residue, 111 clashes 0 breaks t124-1mroC at pool[94] 103.843 bits/residue, 118 clashes 0 breaks t124-1mroC at pool[95] 130.59 bits/residue, 170 clashes 0 breaks t124-1mroC at pool[96] 141.168 bits/residue, 382 clashes 0 breaks t124-1mroC at pool[97] 134.466 bits/residue, 119 clashes 0 breaks t124-1msk at pool[98] 114.475 bits/residue, 110 clashes 0 breaks t124-1msk at pool[99] 126.429 bits/residue, 144 clashes 0 breaks t124-1nbaA at pool[100] 124.741 bits/residue, 182 clashes 0 breaks t124-1noa at pool[101] 120.432 bits/residue, 226 clashes 0 breaks t124-1noa at pool[102] 108.815 bits/residue, 160 clashes 0 breaks t124-1noa at pool[103] 135.013 bits/residue, 314 clashes 0 breaks t124-1nox at pool[104] 126.51 bits/residue, 260 clashes 0 breaks t124-1pda at pool[105] 136.505 bits/residue, 380 clashes 0 breaks t124-1pnkA at pool[106] 135.27 bits/residue, 435 clashes 0 breaks t124-1pnkA at pool[107] 135.837 bits/residue, 336 clashes 0 breaks t124-1pprM at pool[108] 138.71 bits/residue, 361 clashes 0 breaks t124-1qgiA at pool[109] 132.934 bits/residue, 388 clashes 0 breaks t124-1qgiA at pool[110] 135.626 bits/residue, 397 clashes 0 breaks t124-1qgiA at pool[111] 126.423 bits/residue, 404 clashes 0 breaks t124-1qgiA at pool[112] 151.379 bits/residue, 403 clashes 0 breaks t124-1qgiA at pool[113] 149.413 bits/residue, 316 clashes 0 breaks t124-1qhvA at pool[114] 139.375 bits/residue, 564 clashes 0 breaks t124-1qhvA at pool[115] 141.94 bits/residue, 326 clashes 0 breaks t124-1rie at pool[116] 151.707 bits/residue, 491 clashes 0 breaks t124-1ryc at pool[117] 128.252 bits/residue, 521 clashes 0 breaks t124-1shkA at pool[118] 132.13 bits/residue, 467 clashes 0 breaks t124-1sluA at pool[119] 133.198 bits/residue, 329 clashes 0 breaks t124-1svy at pool[120] 145.187 bits/residue, 333 clashes 0 breaks t124-1tl2A at pool[121] 151.821 bits/residue, 349 clashes 0 breaks t124-1vhh at pool[122] 141.016 bits/residue, 355 clashes 0 breaks t124-1vid at pool[123] 145.916 bits/residue, 314 clashes 0 breaks t124-1vom at pool[124] 146.231 bits/residue, 321 clashes 0 breaks t124-1vsrA at pool[125] 115.799 bits/residue, 332 clashes 0 breaks t124-2acy at pool[126] 118.334 bits/residue, 346 clashes 0 breaks t124-2acy at pool[127] 121.489 bits/residue, 298 clashes 0 breaks t124-2acy at pool[128] 125.677 bits/residue, 331 clashes 0 breaks t124-2acy at pool[129] 144.729 bits/residue, 308 clashes 0 breaks t124-2acy at pool[130] 130.37 bits/residue, 506 clashes 0 breaks t124-2acy at pool[131] 139.597 bits/residue, 317 clashes 0 breaks t124-2ae2A at pool[132] 142.76 bits/residue, 318 clashes 0 breaks t124-2dnjA at pool[133] 138.392 bits/residue, 318 clashes 0 breaks t124-2dnjA at pool[134] 141.588 bits/residue, 324 clashes 0 breaks t124-2dnjA at pool[135] 140.716 bits/residue, 319 clashes 0 breaks t124-2dnjA at pool[136] 138.818 bits/residue, 318 clashes 0 breaks t124-2dnjA at pool[137] 139.008 bits/residue, 363 clashes 0 breaks t124-2dnjA at pool[138] 138.879 bits/residue, 352 clashes 0 breaks t124-2sicI at pool[139] 158.292 bits/residue, 424 clashes 0 breaks t124-3lck at pool[140] 136.092 bits/residue, 463 clashes 0 breaks t124-3pcgA at pool[141] 130.117 bits/residue, 398 clashes 0 breaks t124-3pcgA at pool[142] 134.085 bits/residue, 416 clashes 0 breaks t124-4eugA at pool[143] 131.527 bits/residue, 420 clashes 0 breaks t124-7odcA at pool[144] 134.083 bits/residue, 467 clashes 0 breaks t124-init at pool[145] 140.246 bits/residue, 445 clashes 0 breaks t124-opt at pool[146] -7.47252 bits/residue, 14 clashes 124-opt-rot at pool[147] -13.4408 bits/residue, 6 clashes t124-opt-scwrl at pool[148] -13.5594 bits/residue, 2 clashes # command: