(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0124 Phospholipase C beta C-terminus, turkey
    • gi|4894766|gb|AAD32609.1|AF128539_1_888:1099 (AF128539) phospholipid phospholipase C beta isoform [Homarus americanus] (Homarus americanus)
              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 NMKEVTQLPEPQTASLAELQQMKLFLKLLKKQEKELKELERKGSKRREELLQKYSVLFLEP....
   2 EDLIQSVLTEVEAQTIEELKQQKSFVKLHKKHYKEMKDLVKRHHKKTTELIKEHTTKYNEIq...
   3 DDLIASILSEVTPTPLEELRSHKAMVKLRSRQDRDLRELHKKHQRKAVALTRRLLDGLAQAr...
   4 EDLIQSVLTEVEAQTIEELKQQKSFVKLQKKHYKEMKDLVKRHHKKTTDLIKEHTTKYNEIq...
   5 EDLIQSVLTEVEAQTIEELKQQKSFVKLQKKHYKEMKDLVKRHHKKTTDLIKEHTTKYNEIq...
   6 EDLIQSVLTEVEAQTIEELKQQKSFVKLQKKHYKEMKDLVKRHHKKTTELIKEHTTKYNEIq...
   7 EDLIQSVLTEVEAQTIEELKQQKSFVKLQKKHYKEMKDLVKRHHKKTTDLIKEHTTKYNEIq...
   8 EDLIQSVLTEVEAQTIEELKQQKSFVKLQKKHYKEMKDLVKRHHKKTTDLIKEHTTKYNEIq...
   9 EDLIQSVLTEVEAQTIEELKQQKSFVKLQKKHYKEMKDLVKRHHKKTTDLIKEHTTKYNEIq...
  10 DDLIASILSEVAPTPLDELRGHKALVKLRSRQERDLRELRKKHQRKAVTLTRRLLDGLAQAq...
  11 -MKEVTQLPEPQTASLAELQQMKLFLKLLKKQEKELKELERKGSKRREELLQKYSVLFLEPv...
  12 DDLIASILSEVAPTPLDELRGHKALVKLRSRQERDLRELRKKHQRKAVTLTRRLLDGLAQAq...
  13 DDLIASILSEVAPTPLDELRGHKALVKLRSRQERDLRELRKKHQRKAVTLTRRLLDGLAQAq...
  14 -------VAEPQTTSLEELRELKGVVKLQRRHEKELRELERRGARRWEELLQRGAAQLAELq...
  15 ----------VLAEPLEKILDHKSVKEKRLEMEKKLESLRKKHDKEKIKIAGQKSSPLEGKk...
  16 ----------VLAEPLEKILDHKSVKEKRLEMEKKLESLRKKHDKEKIKIAGQKSSPLEGKk...
  17 ----------VLAEPLEKILDHKSVKEKRLEMEKKLESLRKKHDKEKIKIAGQKSSPLEGKk...
  18 -----------PQVRIEDLKQMKAYLKHLKKQQKELNSLKKKHAKEHSTMQKLHCTQVDKIv...
  19 ---------EPRTASLEELRELKGVVKLQRRHEKELRELERRGARRWEELLQRGAAQLAELg...
  20 DDLIASILSEVTPTPLEELRSHKAMVKLRSRQDRDLRELHKKHQRKAVALTRRLLDGLAQAr...
  21 DDHIASVLTDIQAPSMEELKSQKSFEKLICRQYRELRQLRRKHLRKVSSLCKEQSTWVTPLq...
  22 EDLIQSVLTEVEAQTIEELKQQKSFVKLQKKHYKEMKDLVKRHHKKTTDLIKEHTTKYNEIq...
  23 EDLIQSVLTEVEAQTIEELKQQKSFVKLQKKHYKEMKDLVKLHHKKTTELIKEHTTKYNEIq...
  24 EDLIQSVLTEVEAQTIEELKQQKSFVKLHKKHYKEMKDLVKRHHKKTTELIKEHTTKYNEIq...
  25 -----------PQVRIEDLKQMKAYLKHLKKQQKELNSLKKKHAKEHSTMQKLHCTQVDKIv...
  26 -----------PQVRIEDLKQMKAYLKHLKKQQKELSSLKKKHAKEHSTMQKLHCTQVDKIv...
  27 -----------PQVRIEDLKQMKAYLKHLKKQQKELSSLKKKHAKEHSTMQKLHCTQVDKIv...
  28 -----------PQVRIEDLKQMKAYLKHLKKQQKELSSLKKKHAKEHSTMQKLHCTQVDKIv...
  29 -----------PQVRIEDLKQMKAYLKHLKKQQKELSSLKKKHAKEHSTMQKLHCTQVDKIv...
  30 EDLIQSVLTEVEAQTIEELKQQKSFVKLQKKHYKEMKDLVKRHHKKTTDLIKEHTTKYNEIq...
  31 -----------PQVRIEDLKQMKAYLKHLKKQQKELNSLKKKHAKEHSTMQKLHCTQVDKIv...
  32 --------FKVDPIEVDDLRRDKAFAKLLKRFQKELDDLRKKHQKQRDSIQKQQQTNVDKLi...
  33 --------FKVDPIEVDDLRRDKAFAKLLKRFQKELDDLRKKHQKQRDSIQKQQPARRRNSs...
  34 --------FKVDPIEVDDLRRDKAFAKLLKRFQKELDDLRKKHQKQRDSIQKQQQTNVDKLi...
  35 EKKEPPLVFEPVT--LESLRQEKGFQKVGKKQIKELDTLRKKHAKERTSVQKTQNAAIDKL....
  36 EKKEPPLVFEPVT--LESLRQEKGFQKVGKKQIKELDTLRKKHAKERTSVQKTQNAAIDKL....
  37 EKKEPPLVFEPVT--LESLRQEKGFQKVGKKQIKELDTLRKKHAKERTSVQKTQNAAIDKL....
  38 -------FVEYEPINLETLRSQKNFLKATKKQQKELESMRKKHMKERLSIQKAQCSAIEKL....
  39 ----------VALPKLDALKSNKAYAKIISKRDKEVDSIKKKNDKAQSNMKTKMKAEEKKMk...
  40 --------------KIDDFKLDKMFLRIAKKNGKEVDILKQNHRKERKLTESFYDEEISKLq...


                   70         80        90       100       110       12
                   |          |         |         |         |         
   1 .VYPRGL.....DSQVVELKER.LEMELIHLGEEYHDGIRRRKEQHATEQTAKITELAREKQIAE
   2 .40laAL.....DAEMTQKLID.LKDKQQQQLLNLRQEQYYSEKYQKREHIKLLIQKLTDVAEEC
   3 .21edVK.....EEEEAKQYRE.FQNRQVQSLLELREAQADVETKRKLEHLRQAHQRLKEVVLDT
   4 .40laAL.....DAEMTQKLVD.LKDKQQQQLLNLRQEQYYSEKYQKREHIKLLIQKLTDVAEEC
   5 .40laAL.....DAEMTQKLVD.LKDKQQQQLLNLRQEQYYSEKYQKREHIKLLIQKLTDVAEEC
   6 .40laAL.....DAEMTQKLID.LKDKQQQQLLNLRQEQYYSEKYQKREHIKLLIQKLTDVAEEC
   7 .40laAL.....DAEMTQKLID.LKDKQQQQLLNLRQEQYYSEKYQKREHIKLLIQKLTDVAEEC
   8 .40laAL.....DAEMTQKLID.LKDKQQQQLLNLRQEQYYSEKYQKREHIKLLIQKLTDVAEEC
   9 .40laAL.....DAEMTQKLID.LKDKQQQQLLNLRQEQYYSEKYQKREHIKLLIQKLTDVAEEC
  10 .22dtKE.....GEDEAKRYQE.FQNRQVQSLLELREAQVDAEAQRRLEHLRQALQRLREVVLDA
  11 .33pvEM.....AEKLDSQVVE.LKERLEMELIHLGEEYHDGIRRRKEQHATEQTAKITELAREK
  12 .22dtKE.....GEDEAKRYQE.FQNRQVQSLLELREAQVDAEAQRRLEHLRQALQRLREVVLDA
  13 .22dtKE.....GEDEAKRYQE.FQNRQVQSLLELREAQVDAEAQRRLEHLRQALQRLREVVLDA
  14 .31prEV.....LEGPDPRVQD.LKDRLEQELQQQGEEQYRSVLKRKEQHVTEQIAKMMELAREK
  15 .49aaDA.....GEDLAGGSSS.LDGRtQESRLRSACREYTSQYRELQEKYHEAIYSAAEKVLKT
  16 .49aaDA.....GEDLAGGSSS.LDGRtQESRLRSACREYTSQYRELQEKYHEAIYSAAEKVLKT
  17 .42aaDA.....GEDLAGGSSS.LDGRtQESRLRSACREYTSQYRELQEKYHEAIYSAAEKVLKT
  18 .39iqTL.....TSDHKSKVKE.IVAQHTKEWSEMINTHSAEEQEIRDLHLSQQCELLKKLLINA
  19 .36pgEG.....PEGVDGRVRE.LKDRLELELLRQGEEQYECVLKRKEQHVAEQISKMMELAREK
  20 .23vkEE.....EKEAARQYRE.FQNRQVQSLLELREAQADAETERRLEHLKQAQQRLREVVLDA
  21 .17vsGA.....DQDAEQKLMD.MQRDQQKRLLELREIQHEQERKLKHSHLLQAVQKLQEVAISY
  22 .40laAL.....DAEMTQKLID.LKDKQQQQLLNLRQEQYYSEKYQKREHIKLLIQKLTDVAEEC
  23 .40laAL.....DAEMTQKLID.LKDKQQQQLLNLRQEQYYSEKYQKREHIKLLIQKLTDVAEEC
  24 .40laAL.....DAEMTQKLID.LKDKQQQQLLNLRQEQYYSEKYQKREHIKLLIQKLTDVAEEC
  25 .39iqTL.....TSDHKSKVKE.IVAQHTKEWSEMINTHSAEEQEIRDLHLSQQCELLRKLLINA
  26 .39iqTL.....TSDHKSKVKE.IVAQHTKEWSDMINTHSAEEQEIRDLLLSQQCELLRKLLISA
  27 .39iqTL.....TSDHKSKVKE.IVAQHTKEWSDMINTHSAEEQEIRDLLLSQQCELLRKLLISA
  28 .39iqTL.....TSDHKSKVKE.IVAQHTKEWSDMINTHSAEEQEIRDLLLSQQCELLRKLLISA
  29 .39iqTL.....TSDHKSKVKE.IVAQHTKEWSDMINTHSAEEQEIRDLLLSQQCELLRKLLISA
  30 .40laAL.....DAEMTQKLID.LKDKQQQQLLNLRQEQYYSEKYQKREHIKLLIQKLTDVAEEC
  31 .39iqTL.....TSDHKSKVKE.IVAQHTKECSEMINTHSAEEQEIRDLHMSQQCELLRKLLINV
  32 .72gsPV.....PQDLvnNDRV.RSLVNTQTGEWSAMVRRHDEEEFELKKVQLKEQFDLLRKLMS
  33 .84gsPV.....PQDLvnNDRV.RSLVNTQTGEWSAMVRRHDEEEFELKKVQLKEQFDLLRKLMS
  34 .72gsPV.....PQDLvnNDRV.RSLVNTQTGEWSAMVRRHDEEEFELKKVQLKEQFDLLRKLMS
  35 .IKGKSKddirnDANIKNSIND.QTKQWTDMIARHRKEEWDMLRQHVQDSQDAMKALMLTVQAAQ
  36 .IKGKSKddirnDANIKNSIND.QTKQWTDMIARHRKEEWDMLRQHVQDSQDAMKALMLTVQAAQ
  37 .IKGKSKddirnDANIKNSIND.QTKQWTDMIARHRKEEWDMLRQHVQDSQDAMKALMLTVQAAQ
  38 .AKGKKDvmd..DPKIKSLVSE.QMKQWSEMMEKHRKEEWEMLKEHLKSQEDILKKLMEEEQAGQ
  39 .20hdQL.....VKENQDKFNQ.LHKENIDKYLATCSEHFNAESEICKKYIDSLNDCLKGVITST
  40 .66tkIW.....KTEKVGKISV.IVEEQKKALKIMIDEHIEKEARIKYSHSIQQIDLIGKLLKTA


      0       130       140           150       160         170       1
     |         |         |             |         |           |        
   1 LKALKESSESNIKDIKKKLEAKRLDRIQVM....MRSTSDKAAQERL..KKEINNSHIQEVVQTI
   2 QNNQLKKLKEICEKEKKELKKKMDKKRQEK....ITEA--TSKDKSQ..MEEEKTEMIRSYIQEV
   3 HTTQFKRLKELNEREKKELQKILDRKRNNS....ISEA--KTREKHK..KEVELTEINRRHITES
   4 QNNQLKKLKEICEKEKKELKKKMDKKRQEK....ITEA--KSKDKSQ..MEEEKTEMIRSYIQEV
   5 QNNQLKKLKEICEKEKKELKKKMDKKRQEK....ITEA--KSKDKSQ..MEEEKTEMIRSYIQEV
   6 QNNQLKKLKEICEKEKKELKKKMDKKRQEK....ITEA--KSKDKSQ..MEEEKTEMIRSYIQEV
   7 QNNQLKKLKEICEKEKKELKKKMDKKRQEK....ITEA--KSKDKSQ..MEEEKTEMIRSYIQEV
   8 QNNQLKKLKEICEKEKKELKKKMDKKRQEK....ITEA--KSKDKSQ..MEEEKTEMIRSYIQEV
   9 QNNQLKKLKEICEKEKKELKKKMDKKRQEK....ITEA--KSKDKSQ..MEEEKTEMIRSYIQEV
  10 NTTQFKRLKEMNESWPSWPRSVRSSGRGSP....RRSA----GACWA..RCRRgeLTEINRRHIT
  11 QIAELKALKESSESNIKDIKKKLEAKRLDR....IQVMMRSTSDKAA..QERLKKEINNSHIQEV
  12 NTTQFKRLKEMNEREKKELQKILDRKRHNS....ISEA--KMRDKHK..KEAELTEINRRHITES
  13 NTTQFKRLKEMNEREKKELQKILDRKRHNS....ISEA--KMRDKHK..KEAELTEINRRHITES
  14 QAAELKSFKETSETDTKEMKKKLEAKRLER....IQAMTKVTTDKVA..QERLKREINNSHIQEV
  15 SQTGQTKQLKASLDKVTGEVMHQLQEARRN....EVKNLATVHRDRD..ELIRMKREVASSVVER
  16 SQTGQTKQLKASLDKVTGEVMHQLQEARRN....EVKNLATVHRDRD..ELIRMKREVASSVVER
  17 SQTGQTKQLKASLDKVTGEVMHQLQEARRN....EVKNLATVHRDRD..ELIRMKREVASSVVER
  18 HEQQTQQLKLSHDRESKEMRAHQAKISMEN....SKAIsqDKSIKNK..AERERRVRELNSSNTK
  19 QAAELKALKETSENDTKEMKKKLETKRLER....IQGMTKVTTDKMA..QERLKREINNSHIQEV
  20 HTTQFKRLKELNEREKKELQKILDRKRNNS....ISEA--KTREKHK..KEVELTEINRRHITES
  21 HSTQLKKLKEINEKEKKELQKILDRKRHNS....ITEA--KSRERQK..KDVELTEINRRHINES
  22 QNNQLKKLKEICEKEKKELKKKMDKKRQEK....ITEA--KSKDKSQ..MEEEKTEMIRSYIQEV
  23 QNNQLKKLKEICEKEKKELKKKMDKKLQEK....ITEA--KSKDKSQ..MEEEKTEMIRSYIQEV
  24 QNNQLKKLKEICEKEKKELKKKMDKKRQEK....ITEA--TSKDKSQ..MEEEKTEMIRSYIQEV
  25 HEQQTQQLKLSHDRESKEMRAHQAKISMEN....SKAIsqDKSIKNK..AERERRVRELNSSNTK
  26 HEQQTQQLKLSHDRESKEMRAHQAKISMEN....SKAIsqDKSIKNK..AERERRVRELNSSNTK
  27 HEQQTQQLKLSHDRESKEMRAHQAKISMEN....SKAIsqDKSIKNK..AERERRVRELNSSNTK
  28 HEQQTQQLKLSHDRESKEMRAHQAKISMEN....SKAIsqDKSIKNK..AERERRVRELNSSNTK
  29 HEQQTQQLKLSHDRESKEMRAHQAKISMEN....SKAIsqDKSIKNK..AERERRVRELNSSNTK
  30 QNNQLKKLKEICEKEKKELKKKMDKKRQEK....ITEA--KSKDKSQ..MEEEKTEMIRSYIQEV
  31 HEQQTQQLKVSHDRESKEMRAHQAKICMEN....SKAIsqDKSIKNK..AERERRVRELNSSNTK
  32 EAQKNQMLALKLRLEAEGKDLKQTQTKKSM....EDAKVIqlDKGIK..TKAERDRRVKELNEKN
  33 EAQKNQMLALKLRLEAEGKDLKQTQTKKSM....EDAKVIqlDKGIK..TKAERDRRVKELNEKN
  34 EAQKNQMLALKLRLEAEGKDLKQTQTKKSM....EDAKVIqlDKGIK..TKAERDRRVKELNEKN
  35 IKQLEDRHARDIKDLNAKQAKMSADTAKEVqn..DKTLKTKNEKDRR..LREKRQNNVKRFMEEK
  36 IKQLEDRHARDIKDLNAKQAKMSADTAKEVqn..DKTLKTKNEKDRR..LREKRQNNVKRFMEEK
  37 IKQLEDRHARDIKDLNAKQAKMSADTAKEVqn..DKTLKTKNEKDRR..LREKRQNNVKRFMEEK
  38 IKKMEAKHEQDMKDMKAQQAKAAMETAKDVnq..DKTLKTKADRDRR..LKEKNQNNTKRFIEER
  39 QEDLKKKLQTIHDKEVESMNKELNKKSKEE....QKNLGKETKDKEE..LARKKRELSKKLIDGI
  40 QDNDIKKLAEINEKELSDLTKAQARDSIQS....IKDLekefENSKM..DRINKEKIKRERDKLR


      80       190       200       210       220       230       240  
      |         |         |         |         |         |         |  
   1 KLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEYEEKLKTLTVEVQEMVKNYMKEVFP
   2 VQYIKRLEEAQSKRQEKLVEKHNEIRQQILDEKPKLQTELEQEYQDKFKRLPLEILEFVQEAMK
   3 VNSIRRLEEAQKQRHERLVAGQQQVLQQLEEEEPKLLAQLTQECQEQRERLPQEIRRCLLGETA
   4 VQYIKRLEEAQSKRQEKLVEKHKEIRQQILDEKPKLQVELEQEYQDKFKRLPLEILEFVQEAMK
   5 VQYIKRLEEAQSKRQEKLVEKHKEIRQQILDEKPKLQVELEQEYQDKFKRLPLEILEFVQEAMK
   6 VQYIKRLEEAQSKRQEKLVEKHKEIRQQILDEKPKLQMELEQEYQDKFKRLPLEILEFVQEAMK
   7 VQYIKRLEEAQSKRQEKLVEKHKEIRQQILDEKPKLQVELEQEYQDKFKRLPLEILEFVQEAMK
   8 VQYIKRLEEAQSKRQEKLVEKHKEIRQQILDEKPKLQVELEQEYQDKFKRLPLEILEFVQEAMK
   9 VQYIKRLEEAQSKRQEKLVEKHKEIRQQILDEKPKLQVELEQEYQDKFKRLPLEILEFVQEAMK
  10 ESVNSIRRLEEAQKQRHDRLVAGQQQVLQQLAEEEPKLLAQLAQECQEQRARLPQEIRRSLLGE
  11 VQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEYEEKLKTLTVEVQEMVKNYMK
  12 VNSIRRLEEAQKQRHDRLVAGQQQVLQQLAEEEPKLLAQLAQECQEQRARLPQEIRRSLLGEMP
  13 VNSIRRLEEAQKQRHDRLVAGQQQVLQQLAEEEPKLLAQLAQECQEQRARLPQEIRRSLLGEMP
  14 VQAVKQMTETLERHQEKLEEKQTACLEQIQAMEKQFQEKALAEYEAKMKGLEAEVKESMRACFK
  15 GVAERVRLKQTFDRRTDELQKQHDSVRNALAEHRSKARQILDKEAESRSCVSSNGFLVLFHGPH
  16 GVAERVRLKQTFDRRTDELQKQHDSVRNALAEHRSKARQILDKEAESRSCVSSNGFLVLFHGPH
  17 GVAERVRLKQTFDRRTDELQKQHDSVRNALAEHRSKARQILDKEAESRSCVSSNGFLVLFHGPH
  18 KFLEERKRLAMKQSKEMDQLKKVQLEHLEFLEKQNEQA--------------------------
  19 VQVIKQMTENLERHQEKLEEKQAACLEQIREMEKQFQKEALAEYEARMKGLEAEVKESVRACLR
  20 VNSIRRLEEAQKQRHERLLAGQQQVLQQLVEEEPKLVAQLTQECQEQRERLPQEIRRCLLGETS
  21 VSSIRRLEEAQKRRQEKLQTAHQETLQRIKDEEPKLQAQLDEACQAEFCQLPQEVRRYLQEDGW
  22 VQYIKRLEEAQSKRQEKLVEKHKEIRQQILDEKPK-----------------------------
  23 VQYIKRLEEAQSKRKEKLVEKHKEIRQQILDEKPK-----------------------------
  24 VQYIKRLEEAQSKRQEKLVEKHNEIRQQILDEKPK-----------------------------
  25 KFLEERKRLAMKQSKEMDQLKKVQLEHLEFLEKQNEQA--------------------------
  26 KFLEERKRLAMKQSKEMDQLKKVQLEHLEFVEKQNEQA--------------------------
  27 KFLEERKRLAMKQSKEMDQLKKVQLEHLEFVEKQNEQA--------------------------
  28 KFLEERKRLAMKQSKEMDQLKKVQLEHLEFVEKQNEQA--------------------------
  29 KFLEERKRLAMKQSKEMDQLKKVQLEHLEFVEKQNEQA--------------------------
  30 VQYIKRLEEAQSKRQEKLVEKHKEIRQQILDEKPK-----------------------------
  31 KFLEERKRLAMKQSKEMDQLKKVQLEHLEFLEKQNEQLLKSCHA--------------------
  32 LKMFVEERKRLAMKAQKHEEQLTKRHLDQLEQLDKDFHKALD----------------------
  33 LKMFVEERKRLAMKAQKHEEQLTKRHLDQLEQLDKDFHKALDAEVGNYK---------------
  34 LKMFVEERKRLAMKAQKHEEQLTKRHLDQLEQLDKDFHKALDAEVGNYK---------------
  35 KQIGVKQGRAMEKLKLAHSKQIEEFSTDVQKLMDMYKIEEE-----------------------
  36 KQIGVKQGRAMEKLKLAHSKQIEEFSTDVQKLMDMYKIEEE-----------------------
  37 KQIGVKQGRAMEKLKLAHSKQIEEFSTDVQKLMDMYKIEEE-----------------------
  38 KISAMKQGKQKEKLKKVHDQQMTELTKDIQMAIQFY----------------------------
  39 VAERNKLKALKERQEKVLDKNVEELTKEYEKEKANAENKLKEDIDAKLKKV-------------
  40 IEEFGMQRRKLVQNQQKRQEKLIEKHKNENKQFEDHRKEIIQLGYE------------------