# TARGET T0124 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0124.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 19.948 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 N 0.058 0.215 0.727 2 M 0.061 0.199 0.740 3 K 0.114 0.143 0.743 4 E 0.183 0.104 0.713 5 V 0.166 0.284 0.550 6 T 0.212 0.250 0.538 7 Q 0.284 0.267 0.449 8 L 0.284 0.236 0.481 9 P 0.309 0.191 0.500 10 E 0.212 0.135 0.653 11 P 0.139 0.085 0.776 12 Q 0.115 0.052 0.833 13 T 0.087 0.065 0.848 14 A 0.083 0.050 0.867 15 S 0.046 0.049 0.905 16 L 0.001 0.938 0.060 17 A 0.001 0.949 0.051 18 E 0.001 0.951 0.049 19 L 0.001 0.926 0.073 20 Q 0.002 0.929 0.070 21 Q 0.001 0.920 0.078 22 M 0.001 0.962 0.038 23 K 0.001 0.973 0.027 24 L 0.001 0.982 0.018 25 F 0.001 0.990 0.009 26 L 0.001 0.990 0.010 27 K 0.001 0.990 0.009 28 L 0.001 0.987 0.013 29 L 0.001 0.975 0.024 30 K 0.001 0.970 0.030 31 K 0.001 0.947 0.052 32 Q 0.001 0.915 0.084 33 E 0.001 0.947 0.052 34 K 0.001 0.933 0.066 35 E 0.002 0.932 0.066 36 L 0.001 0.970 0.029 37 K 0.001 0.973 0.027 38 E 0.001 0.973 0.026 39 L 0.001 0.970 0.029 40 E 0.002 0.958 0.041 41 R 0.002 0.940 0.058 42 K 0.002 0.904 0.093 43 G 0.003 0.763 0.233 44 S 0.003 0.873 0.125 45 K 0.004 0.898 0.098 46 R 0.010 0.887 0.103 47 R 0.011 0.932 0.058 48 E 0.010 0.944 0.046 49 E 0.006 0.962 0.032 50 L 0.005 0.967 0.028 51 L 0.005 0.963 0.032 52 Q 0.004 0.959 0.037 53 K 0.004 0.929 0.067 54 Y 0.006 0.874 0.119 55 S 0.006 0.827 0.168 56 V 0.006 0.775 0.219 57 L 0.009 0.687 0.305 58 F 0.008 0.699 0.293 59 L 0.009 0.683 0.307 60 E 0.010 0.629 0.361 61 P 0.012 0.294 0.694 62 V 0.017 0.323 0.660 63 Y 0.010 0.294 0.696 64 P 0.005 0.139 0.856 65 R 0.008 0.434 0.558 66 G 0.009 0.559 0.432 67 L 0.006 0.702 0.292 68 D 0.007 0.733 0.260 69 S 0.009 0.746 0.245 70 Q 0.012 0.753 0.235 71 V 0.015 0.835 0.150 72 V 0.013 0.912 0.075 73 E 0.016 0.903 0.081 74 L 0.007 0.937 0.056 75 K 0.005 0.939 0.056 76 E 0.002 0.965 0.033 77 R 0.001 0.976 0.024 78 L 0.001 0.982 0.018 79 E 0.001 0.992 0.007 80 M 0.001 0.996 0.004 81 E 0.001 0.996 0.003 82 L 0.001 0.997 0.003 83 I 0.001 0.997 0.003 84 H 0.001 0.997 0.003 85 L 0.001 0.994 0.005 86 G 0.001 0.989 0.011 87 E 0.001 0.984 0.015 88 E 0.001 0.978 0.022 89 Y 0.002 0.946 0.053 90 H 0.001 0.936 0.062 91 D 0.001 0.962 0.037 92 G 0.001 0.970 0.030 93 I 0.001 0.978 0.021 94 R 0.001 0.985 0.014 95 R 0.001 0.986 0.014 96 R 0.001 0.989 0.011 97 K 0.001 0.988 0.012 98 E 0.001 0.991 0.009 99 Q 0.001 0.990 0.010 100 H 0.001 0.987 0.013 101 A 0.001 0.989 0.011 102 T 0.001 0.993 0.007 103 E 0.001 0.993 0.007 104 Q 0.001 0.992 0.008 105 T 0.001 0.992 0.008 106 A 0.001 0.993 0.007 107 K 0.001 0.993 0.007 108 I 0.001 0.991 0.009 109 T 0.001 0.994 0.006 110 E 0.001 0.996 0.004 111 L 0.001 0.993 0.007 112 A 0.001 0.992 0.007 113 R 0.001 0.990 0.010 114 E 0.001 0.988 0.012 115 K 0.001 0.982 0.018 116 Q 0.001 0.966 0.033 117 I 0.001 0.978 0.021 118 A 0.001 0.971 0.029 119 E 0.001 0.979 0.021 120 L 0.001 0.989 0.011 121 K 0.001 0.990 0.009 122 A 0.001 0.991 0.009 123 L 0.001 0.985 0.014 124 K 0.001 0.977 0.022 125 E 0.001 0.971 0.028 126 S 0.001 0.916 0.083 127 S 0.002 0.699 0.299 128 E 0.001 0.940 0.059 129 S 0.001 0.912 0.087 130 N 0.001 0.887 0.112 131 I 0.002 0.902 0.096 132 K 0.003 0.874 0.123 133 D 0.001 0.892 0.106 134 I 0.001 0.977 0.022 135 K 0.001 0.981 0.019 136 K 0.001 0.988 0.012 137 K 0.001 0.982 0.017 138 L 0.001 0.973 0.026 139 E 0.001 0.958 0.041 140 A 0.001 0.938 0.061 141 K 0.002 0.889 0.109 142 R 0.003 0.769 0.229 143 L 0.001 0.906 0.093 144 D 0.003 0.841 0.156 145 R 0.006 0.794 0.200 146 I 0.005 0.889 0.106 147 Q 0.010 0.866 0.124 148 V 0.012 0.844 0.145 149 M 0.009 0.816 0.175 150 M 0.010 0.730 0.260 151 R 0.012 0.568 0.420 152 S 0.017 0.348 0.635 153 T 0.025 0.212 0.763 154 S 0.023 0.167 0.810 155 D 0.012 0.121 0.867 156 K 0.001 0.900 0.099 157 A 0.001 0.921 0.078 158 A 0.001 0.957 0.042 159 Q 0.001 0.942 0.057 160 E 0.001 0.957 0.041 161 R 0.002 0.953 0.045 162 L 0.002 0.947 0.050 163 K 0.002 0.960 0.038 164 K 0.004 0.929 0.068 165 E 0.004 0.922 0.074 166 I 0.003 0.910 0.087 167 N 0.003 0.874 0.123 168 N 0.002 0.893 0.105 169 S 0.004 0.846 0.150 170 H 0.005 0.915 0.080 171 I 0.004 0.968 0.028 172 Q 0.003 0.988 0.009 173 E 0.003 0.994 0.004 174 V 0.002 0.995 0.003 175 V 0.001 0.997 0.002 176 Q 0.001 0.998 0.002 177 T 0.001 0.997 0.003 178 I 0.001 0.996 0.004 179 K 0.001 0.996 0.004 180 L 0.001 0.991 0.008 181 L 0.001 0.975 0.024 182 T 0.001 0.969 0.030 183 E 0.001 0.933 0.066 184 K 0.002 0.893 0.105 185 T 0.004 0.795 0.202 186 A 0.004 0.710 0.286 187 R 0.002 0.797 0.201 188 Y 0.001 0.961 0.038 189 Q 0.001 0.981 0.019 190 Q 0.001 0.991 0.008 191 K 0.001 0.992 0.008 192 L 0.001 0.994 0.005 193 E 0.001 0.994 0.006 194 E 0.001 0.996 0.004 195 K 0.001 0.996 0.003 196 Q 0.001 0.994 0.006 197 A 0.001 0.996 0.004 198 E 0.001 0.996 0.004 199 N 0.001 0.995 0.005 200 L 0.001 0.997 0.003 201 R 0.001 0.996 0.004 202 A 0.001 0.996 0.004 203 I 0.001 0.990 0.010 204 Q 0.001 0.985 0.015 205 E 0.001 0.981 0.019 206 K 0.001 0.961 0.038 207 E 0.001 0.940 0.059 208 G 0.001 0.957 0.043 209 Q 0.001 0.964 0.036 210 L 0.001 0.974 0.025 211 Q 0.001 0.982 0.018 212 Q 0.001 0.991 0.009 213 E 0.001 0.992 0.008 214 A 0.001 0.989 0.010 215 V 0.001 0.990 0.010 216 A 0.001 0.986 0.014 217 E 0.001 0.979 0.021 218 Y 0.001 0.971 0.029 219 E 0.001 0.957 0.042 220 E 0.001 0.950 0.049 221 K 0.003 0.895 0.102 222 L 0.007 0.795 0.199 223 K 0.011 0.634 0.355 224 T 0.021 0.443 0.536 225 L 0.017 0.351 0.632 226 T 0.007 0.525 0.469 227 V 0.001 0.971 0.028 228 E 0.002 0.983 0.016 229 V 0.007 0.978 0.015 230 Q 0.013 0.977 0.010 231 E 0.017 0.974 0.009 232 M 0.009 0.978 0.013 233 V 0.009 0.962 0.029 234 K 0.005 0.927 0.068 235 N 0.003 0.897 0.100 236 Y 0.008 0.724 0.268 237 M 0.011 0.471 0.518 238 K 0.027 0.524 0.450 239 E 0.031 0.432 0.537 240 V 0.043 0.359 0.598 241 F 0.029 0.175 0.796 242 P 0.007 0.011 0.982