PFRMAT SS
TARGET T0124
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0124.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 19.948
METHOD
MODEL 1
N C 0.727
M C 0.740
K C 0.743
E C 0.713
V C 0.550
T C 0.538
Q C 0.449
L C 0.481
P C 0.500
E C 0.653
P C 0.776
Q C 0.833
T C 0.848
A C 0.867
S C 0.905
L H 0.938
A H 0.949
E H 0.951
L H 0.926
Q H 0.929
Q H 0.920
M H 0.962
K H 0.973
L H 0.982
F H 0.990
L H 0.990
K H 0.990
L H 0.987
L H 0.975
K H 0.970
K H 0.947
Q H 0.915
E H 0.947
K H 0.933
E H 0.932
L H 0.970
K H 0.973
E H 0.973
L H 0.970
E H 0.958
R H 0.940
K H 0.904
G H 0.763
S H 0.873
K H 0.898
R H 0.887
R H 0.932
E H 0.944
E H 0.962
L H 0.967
L H 0.963
Q H 0.959
K H 0.929
Y H 0.874
S H 0.827
V H 0.775
L H 0.687
F H 0.699
L H 0.683
E H 0.629
P C 0.694
V C 0.660
Y C 0.696
P C 0.856
R C 0.558
G H 0.559
L H 0.702
D H 0.733
S H 0.746
Q H 0.753
V H 0.835
V H 0.912
E H 0.903
L H 0.937
K H 0.939
E H 0.965
R H 0.976
L H 0.982
E H 0.992
M H 0.996
E H 0.996
L H 0.997
I H 0.997
H H 0.997
L H 0.994
G H 0.989
E H 0.984
E H 0.978
Y H 0.946
H H 0.936
D H 0.962
G H 0.970
I H 0.978
R H 0.985
R H 0.986
R H 0.989
K H 0.988
E H 0.991
Q H 0.990
H H 0.987
A H 0.989
T H 0.993
E H 0.993
Q H 0.992
T H 0.992
A H 0.993
K H 0.993
I H 0.991
T H 0.994
E H 0.996
L H 0.993
A H 0.992
R H 0.990
E H 0.988
K H 0.982
Q H 0.966
I H 0.978
A H 0.971
E H 0.979
L H 0.989
K H 0.990
A H 0.991
L H 0.985
K H 0.977
E H 0.971
S H 0.916
S H 0.699
E H 0.940
S H 0.912
N H 0.887
I H 0.902
K H 0.874
D H 0.892
I H 0.977
K H 0.981
K H 0.988
K H 0.982
L H 0.973
E H 0.958
A H 0.938
K H 0.889
R H 0.769
L H 0.906
D H 0.841
R H 0.794
I H 0.889
Q H 0.866
V H 0.844
M H 0.816
M H 0.730
R H 0.568
S C 0.635
T C 0.763
S C 0.810
D C 0.867
K H 0.900
A H 0.921
A H 0.957
Q H 0.942
E H 0.957
R H 0.953
L H 0.947
K H 0.960
K H 0.929
E H 0.922
I H 0.910
N H 0.874
N H 0.893
S H 0.846
H H 0.915
I H 0.968
Q H 0.988
E H 0.994
V H 0.995
V H 0.997
Q H 0.998
T H 0.997
I H 0.996
K H 0.996
L H 0.991
L H 0.975
T H 0.969
E H 0.933
K H 0.893
T H 0.795
A H 0.710
R H 0.797
Y H 0.961
Q H 0.981
Q H 0.991
K H 0.992
L H 0.994
E H 0.994
E H 0.996
K H 0.996
Q H 0.994
A H 0.996
E H 0.996
N H 0.995
L H 0.997
R H 0.996
A H 0.996
I H 0.990
Q H 0.985
E H 0.981
K H 0.961
E H 0.940
G H 0.957
Q H 0.964
L H 0.974
Q H 0.982
Q H 0.991
E H 0.992
A H 0.989
V H 0.990
A H 0.986
E H 0.979
Y H 0.971
E H 0.957
E H 0.950
K H 0.895
L H 0.795
K H 0.634
T C 0.536
L C 0.632
T H 0.525
V H 0.971
E H 0.983
V H 0.978
Q H 0.977
E H 0.974
M H 0.978
V H 0.962
K H 0.927
N H 0.897
Y H 0.724
M C 0.518
K H 0.524
E C 0.537
V C 0.598
F C 0.796
P C 0.982
END