# TARGET T0123 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0123.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 108.694 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 V 0.155 0.096 0.749 2 E 0.128 0.093 0.779 3 V 0.109 0.128 0.763 4 T 0.121 0.157 0.722 5 P 0.152 0.188 0.660 6 I 0.145 0.204 0.650 7 M 0.087 0.207 0.707 8 T 0.062 0.183 0.755 9 E 0.057 0.127 0.815 10 L 0.059 0.089 0.851 11 D 0.044 0.038 0.918 12 T 0.014 0.673 0.312 13 Q 0.019 0.715 0.266 14 K 0.018 0.807 0.175 15 V 0.053 0.644 0.303 16 A 0.083 0.462 0.454 17 G 0.124 0.166 0.710 18 T 0.266 0.224 0.510 19 W 0.422 0.260 0.318 20 H 0.641 0.200 0.160 21 T 0.696 0.212 0.093 22 V 0.659 0.315 0.026 23 A 0.623 0.358 0.019 24 M 0.648 0.319 0.033 25 A 0.677 0.206 0.116 26 V 0.239 0.201 0.560 27 S 0.046 0.101 0.853 28 D 0.021 0.298 0.681 29 V 0.033 0.430 0.537 30 S 0.077 0.444 0.479 31 L 0.108 0.471 0.421 32 L 0.146 0.450 0.404 33 D 0.118 0.476 0.407 34 A 0.048 0.586 0.365 35 K 0.047 0.534 0.420 36 S 0.029 0.476 0.495 37 S 0.029 0.200 0.772 38 P 0.052 0.265 0.683 39 L 0.111 0.250 0.638 40 K 0.239 0.191 0.570 41 A 0.564 0.097 0.338 42 Y 0.812 0.041 0.146 43 V 0.902 0.030 0.069 44 E 0.926 0.020 0.053 45 G 0.950 0.011 0.039 46 L 0.940 0.005 0.055 47 K 0.918 0.003 0.079 48 P 0.747 0.006 0.247 49 T 0.375 0.008 0.618 50 P 0.066 0.019 0.915 51 E 0.025 0.013 0.961 52 G 0.106 0.014 0.880 53 D 0.281 0.004 0.716 54 L 0.820 0.001 0.179 55 E 0.960 0.001 0.040 56 I 0.989 0.001 0.010 57 L 0.993 0.001 0.006 58 L 0.989 0.001 0.010 59 Q 0.977 0.002 0.021 60 K 0.932 0.006 0.062 61 R 0.764 0.016 0.219 62 E 0.486 0.040 0.474 63 N 0.120 0.038 0.842 64 D 0.110 0.025 0.866 65 K 0.543 0.016 0.441 66 C 0.772 0.008 0.220 67 A 0.921 0.003 0.076 68 Q 0.958 0.002 0.040 69 E 0.949 0.002 0.049 70 V 0.965 0.001 0.034 71 L 0.954 0.002 0.044 72 L 0.947 0.002 0.051 73 A 0.904 0.004 0.092 74 K 0.762 0.007 0.231 75 K 0.602 0.014 0.385 76 T 0.331 0.015 0.654 77 D 0.198 0.017 0.785 78 I 0.064 0.004 0.932 79 P 0.133 0.009 0.857 80 A 0.404 0.007 0.589 81 V 0.847 0.006 0.147 82 F 0.955 0.003 0.042 83 K 0.959 0.003 0.037 84 I 0.922 0.003 0.075 85 N 0.761 0.005 0.234 86 A 0.593 0.006 0.401 87 L 0.330 0.012 0.659 88 D 0.164 0.006 0.830 89 E 0.176 0.006 0.818 90 N 0.331 0.003 0.666 91 Q 0.809 0.001 0.190 92 L 0.948 0.001 0.052 93 F 0.987 0.001 0.012 94 L 0.986 0.001 0.013 95 L 0.942 0.001 0.057 96 D 0.796 0.001 0.203 97 T 0.440 0.002 0.558 98 D 0.179 0.003 0.818 99 Y 0.099 0.188 0.713 100 D 0.091 0.195 0.714 101 S 0.226 0.156 0.618 102 H 0.749 0.044 0.207 103 L 0.941 0.014 0.044 104 L 0.976 0.011 0.013 105 L 0.978 0.011 0.011 106 C 0.970 0.008 0.023 107 M 0.920 0.011 0.069 108 E 0.768 0.025 0.207 109 N 0.593 0.033 0.374 110 S 0.546 0.043 0.411 111 A 0.221 0.056 0.723 112 S 0.027 0.038 0.935 113 P 0.018 0.027 0.955 114 E 0.213 0.023 0.764 115 H 0.712 0.006 0.283 116 S 0.914 0.001 0.085 117 L 0.972 0.001 0.028 118 V 0.989 0.001 0.011 119 C 0.995 0.001 0.005 120 Q 0.995 0.001 0.004 121 S 0.988 0.001 0.011 122 L 0.936 0.002 0.062 123 A 0.767 0.004 0.228 124 R 0.336 0.009 0.654 125 T 0.061 0.006 0.933 126 L 0.019 0.231 0.750 127 E 0.021 0.164 0.815 128 V 0.013 0.200 0.787 129 D 0.005 0.092 0.903 130 D 0.001 0.961 0.038 131 Q 0.001 0.968 0.032 132 I 0.001 0.983 0.017 133 R 0.001 0.983 0.017 134 E 0.001 0.992 0.008 135 K 0.001 0.993 0.006 136 F 0.001 0.995 0.005 137 E 0.001 0.996 0.003 138 D 0.001 0.995 0.004 139 A 0.001 0.992 0.008 140 L 0.001 0.988 0.011 141 K 0.001 0.977 0.022 142 T 0.001 0.962 0.038 143 L 0.002 0.765 0.233 144 S 0.003 0.013 0.983 145 V 0.032 0.004 0.963 146 P 0.061 0.011 0.928 147 M 0.015 0.638 0.347 148 R 0.015 0.715 0.269 149 I 0.054 0.587 0.359 150 L 0.144 0.291 0.565 151 P 0.229 0.135 0.636 152 A 0.240 0.094 0.666 153 Q 0.140 0.056 0.803 154 L 0.104 0.060 0.836 155 E 0.096 0.056 0.848 156 E 0.230 0.055 0.715 157 Q 0.395 0.042 0.563 158 C 0.660 0.031 0.309 159 R 0.647 0.020 0.333 160 V 0.414 0.021 0.565