(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • gi|520|emb|CAA32835.1|_18:178 (X14712) beta-lactoglobulin [Bos taurus] (Bos taurus)
    • gi|6980895|pdb|1BSO|A_2:162 Chain A, 12-Bromododecanoic Acid Binds Inside The Calyx Of Bovine Beta-Lactoglobulin (Bos taurus)
    • gi|4388968|pdb|1BSY| Structural Basis Of The Tanford Transition Of Bovine Beta-Lactoglobulin From Crystal Structures At Three Ph Values; Ph 7.1 (Bos taurus)
    • gi|4388939|pdb|2BLG| Structural Basis Of The Tanford Transition Of Bovine Beta-Lactoglobulin From Crystal Structures At Three Ph Values; Ph 8.2 (Bos taurus)
    • gi|4388947|pdb|3BLG| Structural Basis Of The Tanford Transition Of Bovine Beta-Lactoglobulin From Crystal Structures At Three Ph Values; Ph 6.2 (Bos taurus)
    • gi|7766897|pdb|1CJ5|A_4:162 Chain A, Bovine Beta-Lactoglobulin A (Bos taurus)
    • gi|7245834|pdb|1DV9|A Chain A, Structural Changes Accompanying Ph-Induced Dissociation Of The B-Lactoglobulin Dimer (Bos taurus)
    • gi|6729725|pdb|1BSQ|A_2:162 Chain A, Structural And Functional Consequences Of Point Mutations Of Variants A And B Of Bovine Beta-Lactoglobulin (Bos taurus)
    • gi|4388846|pdb|1B0O| Bovine Beta-Lactoglobulin Complexed With Palmitate, Lattice Z (Bos taurus)
    • T0123 Beta-lactoglobulin, pig
    • gi|130701|sp|P09466|PAEP_HUMAN_19:179 GLYCODELIN PRECURSOR (GD) (PREGNANCY-ASSOCIATED ENDOMETRIAL ALPHA-2 GLOBULIN) (PEG) (PAEG) (PLACENTAL PROTEIN 14) (PROGESTERONE-ASSOCIATED ENDOMETRIAL PROTEIN) (PROGESTAGEN-ASSOCIATED ENDOMETRIAL PROTEIN) (Homo sapiens)
    • gi|107374|pir||A39167 placental protein 14 precursor - human (Homo sapiens)
    • gi|182094|gb|AAA35801.1| (M61886) pregnancy-associated endometrial alpha2-globulin [Homo sapiens] (Homo sapiens)
    • gi|190217|gb|AAA60148.1| (M34046) placental protein 14 precursor (PP14) [Homo sapiens] (Homo sapiens)
    • gi|4505583|ref|NP_002562.1|_2:161 progestagen-associated endometrial protein (placental protein 14, pregnancy-associated endometrial alpha-2-globulin, alpha uteri (Homo sapiens)
    • gi|190215|gb|AAA60147.1| (J04129) placental protein 14 [Homo sapiens] (Homo sapiens)
    • gi|182093|gb|AAA35802.1|_28:157 (M61886) pregnancy-associated endometrial alpha2-globulin [Homo sapiens] (Homo sapiens)
              10        20        30        40        50             60
              |         |         |         |         |              |
   1 --LPPTMEDLDIRQVAGTWHSMAMAASDISLLDSETAPLRVYVQELRPTPRDNLEII.....LRK
   2 --------DLDIRQVAGTWHSMAMAASDISLLDSETAPLRVYVQELRPTPQDNLEII.....LRK
   3 --LPPTMEDLDIRQVAGTWHSMAMAASDISLLDSETAPLRVYVQELRPTPRDNLEII.....LRK
   4 --------DLDIRQVAGMWHSMAMAASDISLLDSETAPLRVYVQELRPTPQDNLEII.....LRK
   5 -DIPQTMQDLDLQEVAGRWHSVAMVASDISLLDSESAPLRVYVEELRPTPEGNLEII.....LRE
   6 -DIPQTMQDLDLQEVAGRWHSVAMVASDISLLDSESVPLRVYVEELRPTPEGNLEII.....LRE
   7 -DIPQTMQDLDLQEVAGRWHSVAMVASDISLLDSEEAPLRVYVEELRPTPEGNLEII.....LRE
   8 --IPQTMQDLDLQEVAGKWHSVAMAASDISLLDSESAPLRVYIEKLRPTPEDNLEII.....LRE
   9 --IPQTMQDLDLQEVAGKWHSVAMAASDISLLDSEEAPLRVYIEKLRPTPEDNLEII.....LRE
  10 --IPQTMQDLDLQEVAGKWHSVAMAASDISLLDSEEAPLRVYIEKLRPTPEDNLEII.....LRE
  11 ---PLTMDGLDLQKVAGTWHSMAMAASDISLLDSEYAPLRVYVQELRPTPRDNLEII.....LRK
  12 --------GLDLQKVAGTWHSMAMAASDISLLDSETAPLRVYVQELRPTPRDNLEII.....LRK
  13 --------GLDLQKVAGMWHSMAMAASDISLLDSETAPLRVYVQELRPTPRDNLEII.....LRK
  14 --------GLDLQKVAGMWHSMAMAASDISLLDSETAPLRVYVQELRPTPRDNLEII.....LRK
  15 ---PLTMDGLDLQKVAGMWHSMAMAASDISLLDSETAPLRVYVQELRPTPRDNLEII.....LRK
  16 ---PLTMDGLDLQKVAGMWHSMAMAASDISLLDSETAPLRVYVQ-LRPTPRDNLEII.....LRK
  17 -VIPRTMEDLDLQKVAGTWHSMAMAASDISLLDSETAPLRVYIQELRPTPQDNLEIV.....LRK
  18 -VIPRTMEDLDLQKVAGTWHSMAMAASDISLLDSETAPLRVYIQELRPTPQDNLEIV.....LRK
  19 -VVPRTMEDLDLQKVAGTWHSMAMAASDISLLDSETAPLRVYIQELRPTPQDNLEIV.....LRK
  20 IIVTQTMKGLDIQKVAGTWHSLAMAASDISLLDAQSAPLRVYVEELKPTPEGNLEIL.....LQK
  21 -IVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEIL.....LQK
  22 -IVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEIL.....LQK
  23 -IVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEIL.....LQK
  24 ---TQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEIL.....LQK
  25 ------------QKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEIL.....LQK
  26 -IVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEIL.....LQK
  27 -IVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEIL.....LQK
  28 -IVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEIL.....LQK
  29 -IVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEIL.....LQK
  30 -IVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEIL.....LQK
  31 -IVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGNLEIL.....LQK
  32 -IVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGNLEIL.....LQK
  33 -IVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGNLEIL.....LQK
  34 -IVTQTMKGLDIQKVAGTWHSLAMAASDISLLDAQSAPLRVYVEELKPTPEGNLEIL.....LQK
  35 -IVTQTMKGLDIQKVAGTWHSLAMAASDISLLDAQSAPLRVYVEELKPTPEGNLEIL.....LQK
  36 VSVIRTMEDLDIQRVAGTWHSVAMAASDISLLDTEEAPLRVNVEELRPTPQGDLEIF.....LQK
  37 VEVTPIMTELDTQKVAGTWHTVAMAVSBVSLLBAKSSPLKAYVZGLKPTPEGDLEIL.....LQK
  38 VEVTPIMTELDTQKVAGTWHTVAMAVSDVSLLDAKSSPLKAYVEGLKPTPEGDLEIL.....LCK
  39 VEVTPIMTELDTQKVAGTWHTVAMAVSDVSLLDAKSSPLKAYVEGLKPTPEGDLEIL.....LQK
  40 VEVTPIMTELDTQKVAGTWHTVAMAVSDVSLLDAKSSPLKAYVEGLKPTPEGDLEIL.....LQK
  41 VEVTPIMTDLDTQKVAGTWHTVAMAVSDVSLLDAKSSPLKAYVEGLKPTPEGDLEIL.....LQK
  42 -NSPQTMQDVELPKLAGTWHSMAMAASDFSLLETKEAPLRIYISSLQPTPEGNLEIVlr...8kq
  43 MDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVHITSLLPTPEDNLEIV.....LHR
  44 MDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVHITSLLPTPEDNLEIV.....LHR
  45 -DIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVHITSLLPTPEDNLEIV.....LHR
  46 -------------------------------LELPKAPLRVHITSLLPTPEDNLEIV.....LHR
  47 VENIRSKNDLGVEKFVGSWYLREAAKTMEFSIP----LFDMDIKEVNLTPEGNLELV.....LLE
  48 --------------------------------------FDMDIKEVNLTPEGNLELV.....LLE
  49 VENIRSKNDLGVEKFVGSWYLREAAKTMEFSIP----LFDMDIKEVNLTPEGNLELV.....LLE
  50 -ENIHSKEELVVEKLIGPWYRVEEAKAMEFSIP----LFDMNIKEVNRTPEGNLELI.....VLE


              70        80         90          100       110           
              |         |          |            |         |           
   1 RENHACIEGNIMAQRTEDPAVFMV.DYQGEK...KISVLDTDYTHYMFFCMEAPAPg...TENGM
   2 RENHACIEGNIMAQRTEDPAVFMV.DYQGEK...KISVLDTDYTHYMFFCMEAPAPg...MENGM
   3 RENHACIEGNIMAQRTEDPAVFMV.DYQGEK...KISVLDTDYTHYMFFCMEAPAPg...TENGM
   4 RENHACIEGNIMAQRTEDPAVFTV.DYQGEK...KISVLDTDYTHYMFFCMEAPAPg...TENGM
   5 GANHVCVERNIVAQKTEDPAVFTV.NYQGER...KISVLDTDYAHYMFFCVGPCLPs...AEHGM
   6 GANHACVERNIVAQKTEDPAVFTV.NYQGER...KISVLDTDYAHYMFFCVGPPLPs...AEHGM
   7 GANHACVERNIVAQKTESPAEFKT.EDSAVF...TVNYQPGERKNYLFLCMKDVGPclpsAEHGM
   8 GENKGCAEKKIFAEKTESPAEFKI.NYLDED...TVFALDTDYKNYLFLCMKNAAT....PGQSL
   9 GENKGCAEKKIFAEKTESPAEFKI.NYLDED...TVFALDSDYKNYLFLCMKNAAT....PGQSL
  10 GENKGCAEKKIFAEKTQSPAQFKI.NALDED...TVFYLDTDYKNYLFLCMKNAAT....PGQSL
  11 WEQKRCVQKKILAQKTELPAEFKI.SYLDEN...ELIVLDTDYENYLFFCLENADA....PGQNL
  12 WEHGRCVQKKVWAEKTELLAEFKI.SYLDEN...ELIVLDTDYENYLFFCLENTDA....PGQNL
  13 WEDNRCVEKKVLAEKTECVAKFNI.NYLDEN...ELIVLDTDYENYLFFCLENTDA....PGQNL
  14 WEDNRCVEKKVLAEKTECAAKFNI.NYLDEN...ELIVLDTDYENYLFFCLENTDA....PGQNL
  15 WEDNRCVEKKVLAEKTECAAKFNI.NYLDEN...ELIVLDTDYENYLFFCLENADA....PDQNL
  16 WEDNRCVEKKVLAEKTECAAKFNI.NYLDEN...ELIVLDTDYENYLFFCLENADA....PDQNL
  17 WEDNRCVEKKVFAEKTELAAYFSI.NYVEEN...QIFLLDTDYDNYLFFCMENANA....PQQSL
  18 WEDNRCVEKKVFAEKTELAAXFSI.NYVEEN...QIFLLDTDYDNYLFFCMENANA....PQQSL
  19 WEDGRCAEQKVLAEKTEVPAEFKI.NYVEEN...QIFLLDTDYDNYLFFCEMNADA....PQQSL
  20 WENGECAQKKIIAEKTKIPAVFKI.DALNEN...KVLVLDTDYKKYLLFCMENSAE....PEQSL
  21 WENDECAQKKIIAEKTKIPAVFKL.DAINEN...KVLVLDTDYKKYLLFCMENSAE....PEQSL
  22 WENDECAQKKIIAEKTKIPAVFKI.DALNEN...KVLVLDTDYKKYLLVCMENSAE....PEQSL
  23 WENDECAQKKIIAEKTKIPAVFKI.DALNEN...KVLVLDTDYKKYLLFCMENSAE....PEQSL
  24 WENDECAQKKIIAEKTKIPAVFKI.DALNEN...KVLVLDTDYKKYLLFCMENSAE....PEQSL
  25 WENDECAQKKIIAEKTKIPAVFKI.DALNEN...KVLVLDTDYKKYLLFCMENSAE....PEQSL
  26 WENGECAQKKIIAEKTKIPAVFKI.DALNEN...KVLVLDTDYKKYLLFCMENSAE....PEQSL
  27 WENGECAQKKIIAEKTKIPAVFKI.DALNEN...KVLVLDTDYKKYLLFCMENSAE....PEQSL
  28 WENGECAQKKIIAEKTKIPAVFKI.DALNEN...KVLVLDTDYKKYLLFCMENSAE....PEQSL
  29 WENGECAQKKIIAEKTKIPAVFKI.DALNEN...KVLVLDTDYKKYLLFCMENSAE....PEQSL
  30 WENGECAQKKIIAEKTKIPAVFKI.DALNEN...KVLVLDTDYKKYLLFCMENSAE....PEQSL
  31 WENGECAQKKIIAEKTKIPAVFKI.DALNEN...KVLVLDTDYKKYLLFCMENSAE....PEQSL
  32 WENGECAQKKIIAEKTKIPAVFKI.DALNEN...KVLVLDTDYKKYLLFCMENSAE....PEQSL
  33 WENGECAQKKIIAEKTKIPAVFKI.DALNEN...KVLVLDTDYKKYLLFCMENSAE....PEQSL
  34 WENGECAQKKIIAEKTKIPAVFKI.DALNEN...KVLVLDTDYKKYLLFCMENSAE....PEQSL
  35 WENGECAQKKIIAEKTKIPAVFKI.DALNEN...KVLVLDTDYKKYLLFCMENSAE....PEQSL
  36 -------------EKTEIPAVFXX.NFLN--...------SDYTNYLLFCME----....--VSL
  37 LENDECAQLVAKKEKTNIPAVFKTlEVINEN...RVLVLDTD--------------....-----
  38 RENDKCAQEVLLAKKTDIPAVFKI.NALDEN...QLFLLDTDYDSHLLLCMENASQ....-EHSL
  39 RENDKCAQEVLLAKKTDIPAVFKI.NALDEN...QLFLLDTDYDSHLLLCMENSAS....PEHSL
  40 RENDKCAQEVLLAKKTDIPAVFKI.NALDEN...QLFLLDTDYDSHLLLCMENSAS....PEHSL
  41 RENDKCAQEVLLAKKTDIPAVFKI.NALDEN...QLFLLDTDYDSHLLLCMENSAS....PEHSL
  42 SPFRDSNQCIEEKIIAEKTENPIE.FKINYL...DENRIYLFNTDGSKYLFLCLES....TRR--
  43 WENNSCVEKKVLGEKTENPKKFKI.NYTVAN...EATLLDTDYDNFLFLCLQDTTT....PIQSM
  44 WENNSCVEKKVLGEKTENPKKFKI.NYTVAN...EATLLDTDYDNFLFLCLQDTTT....PIQSM
  45 WENNSCVEKKVLGEKTGNPKKFKI.NYTVAN...EATLLDTDYDNFLFLCLQDTTT....PIQSM
  46 WENNSCVEKKVLGEKTENPKKFKI.NYTVAN...EATLLDTDYDNFLFLCLQDTTT....PIQSM
  47 KT-DRCVEKKLLLKKTKKPTEFEI.YISSESsy.TFCVMETDYDSYFLFCLYNISD....REK-M
  48 KT-DRCVEKKLLLKKTQKPTEFEI.YISSESasyTFSVMETDYDSYFLFCLYNISD....REK-M
  49 KA-DRCVEKKLLLKKTQKPTEFEI.YISSESasyTFSVMETDYDSYFLFCLYNISD....REK-M
  50 QT-DSCVEKKFLLKKTEKPAEFEI.YIPSESasyTLSVMETDYDNYILGCLENVNY....REK-M


      120       130       140       150         160
       |         |         |         |           |
   1 MCQYLARTLKADNEVMEKFDRALQTLPVDIRIIldLTQGEKQCRV
   2 MCQYLARTLKADNEVMEKFDRALQTLPVHIRIIldLTQGKEQCRV
   3 MCQYLARTLKADNEVMEKFDRALQTLPVHIRIIldLTQGKEQCRV
   4 MCQYLARTLKADNEVMEKFDRALQTLPVHIRIIldLTQGKEQCRV
   5 VCQYLARTQKVDEEVMEKFSRALQPLPGHVQIIqdPSGGQERC--
   6 VCQYLARTQKVDEEVMEKFSRALQPLPGRVQIVqdPSGGQERC--
   7 VCQYLARTQKVDEEVMEKFSRALQPLPGRVQIVqdPSGGQERC--
   8 VCQYLARTQMVDEEIMEKFRRALQPLPGRVQIVpdLTRMAERCRI
   9 VCQYLARTQMVDEEIMEKFRRALQPLPGRVQIVpdLTRMAERCRI
  10 VCQYLARTQMVDEEIMEKFRRALQPLPGRVQIVpdLTRMAERCRI
  11 VCQCLTRTLKADNEVMEKFDRALQTLPVDVRLFfdPTQVAEQCRI
  12 VCQCLTRTLKADNEVMEKFDRALQTLPVDVRLFfdPTQVAEQCRV
  13 VCQCLTRTLKADNEVMEKFDRALQTLPVDVRLFfdPTQVAEQC--
  14 VCQCLTRTLKADNEVMEKFDRALQTLPVHVRLFfdPTQVAEQC--
  15 VCQCLTRTLKADNEVMEKFDRALQTLPVHVRLFfdPTQVAEQCRI
  16 VCQCLTRTLKADNEVMEKFDRALQTLPVHVRLFfdPTQVAEQCRI
  17 MCQCLARTLEVNNEVIGKFNRALKTLPVHMQLLn.PTQVEEQCL-
  18 MCQCLARTLEVNNEVIGKFNRALKTLPVHMQLLn.PTQVEEQCL-
  19 MCQCLARTLEVDNEVMEKFNRALKTLPVHMQLLn.PTQAEEQCL-
  20 ACQCL----------------------------..----------
  21 VCQCLVRTPEVDDEALEKFDKALKALPMHIRLSfnPTLQEEQCHI
  22 VCQCLVRTPEVDDEALEKFDKALKALPMHIRLSfnPTQLEEQCHI
  23 VCQCLVRTPEVDDEALEKFDKALKALPMHIRLSfnPTQLEEQCHI
  24 VCQCLVRTPEVDDEALEKFDKALKALPMHIRLSfnPTQLEEQCHI
  25 VCQCLVRTPEVDDEALEKFDKALKALPMHIRLSfnPTQLEEQCHI
  26 VCQCLVRTPEVDDEALEKFDKALKALPMHIRLSfnPTQLEEQCHI
  27 ACQCLVRTPEVDDEALEKFDKALKALPMHIRLSfnPTQLEEQCHI
  28 ACQCLVRTPEVDDEALEKFDKALKALPMHIRLSfnPTQLEEQCHI
  29 ACQCLVRTPEVDDEALEKFDKALKALPMHIRLSfnPTQLEEQCHV
  30 ACQCLVRTPEVDDEALEKFDKALKALPMHIRLSfnPTQLEEQCHV
  31 ACQCLVRTPEVDKEALEKFDKALKALPMHIRLAfnPTQLEGQCHV
  32 ACQCLVRTPEVDNEALEKFDKALKALPMHIRLAfnPTQLEGQCHV
  33 ACQCLVRTPEVDNEALEKFDKALKALPMHIRLAfnPTQLEGQCHV
  34 ACQCLVRTPEVDNEALEKFDKALKALPMHIRLAfnPTQLEGQCHV
  35 ACQCLVRTPEVDNEALEKFDKALKALPMHIRLAfnPTQLEGQCHV
  36 TCQYLARTLQVDDGVMEKFNKAIKPLPMHIRLX..----------
  37 -------------AIKEALEKFDKTLPMSVRIR..PALQEEQCL-
  38 VQQCLARTLEVDDQIREKFEDALKTLSVPMRIL..PAQLEEQCRV
  39 VCQSLARTLEVDDQIREKFEDALKTLSVPMRIL..PAQLEEQCRV
  40 VCQSLARTLEVDDQIREKFEDALKTLSVPMRIL..PAQLEEQCRV
  41 VCQSLARTLEVDDQIREKFEDALKTLSVPMRIL..PAQLEEQCRV
  42 QNLACQYLARTLEVDDKVMAEFISFLKTLPVHM..QIFldMTQAE
  43 MCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLldLKQMEEPCR-
  44 MCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLldLKQMEEPCR-
  45 MCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLldLKQMEEPCR-
  46 MCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLldLKQMEEPCR-
  47 ACAHYVRRIEEN-KGMNEFKKILRTLAMPYTVI..EVRTRDMCHV
  48 ACAHYVRRIEEN-KGMNEFKKILRTLAMPYTVI..EVRTRDMCHV
  49 ACAHYVRRIEEN-KGMNEFKKILRTLAMPYTVI..EVRTRDMCHV
  50 ACAHYERRIEEN-KGMEEFKKIVRTLTIPYTMI..EAQTREMCRV