PFRMAT SS
TARGET T0123
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0123-family.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 6.55042
METHOD
MODEL 1
V C 0.642
E C 0.698
V C 0.719
T C 0.760
P C 0.734
I C 0.790
M H 0.638
T H 0.695
E H 0.729
L C 0.617
D C 0.680
T H 0.898
Q H 0.910
K H 0.943
V H 0.910
A H 0.906
G H 0.879
T H 0.892
W H 0.931
H H 0.958
T H 0.965
V H 0.976
A H 0.974
M H 0.970
A H 0.931
V H 0.837
S H 0.568
D C 0.549
V H 0.494
S C 0.506
L C 0.503
L C 0.667
D C 0.707
A C 0.697
K C 0.699
S C 0.748
S C 0.837
P C 0.780
L C 0.541
K E 0.694
A E 0.875
Y E 0.911
V E 0.912
E E 0.861
G E 0.703
L C 0.616
K C 0.835
P C 0.763
T C 0.897
P C 0.923
E C 0.924
G C 0.931
D C 0.937
L C 0.477
E E 0.838
I E 0.921
L E 0.935
L E 0.896
Q E 0.765
K E 0.464
R C 0.614
E C 0.740
N C 0.844
D H 0.502
K H 0.674
C H 0.845
A H 0.894
Q H 0.902
E H 0.945
V H 0.930
L H 0.933
L H 0.943
A H 0.921
K H 0.837
K H 0.646
T C 0.647
D C 0.863
I C 0.894
P C 0.818
A C 0.556
V E 0.735
F E 0.884
K E 0.907
I E 0.835
N E 0.651
A E 0.544
L C 0.560
D C 0.668
E C 0.765
N C 0.724
Q E 0.623
L E 0.826
F E 0.936
L E 0.942
L E 0.863
D E 0.628
T C 0.753
D C 0.889
Y C 0.826
D C 0.751
S C 0.656
H E 0.527
L E 0.783
L E 0.856
L E 0.820
C E 0.753
M E 0.522
E C 0.677
N C 0.779
S C 0.757
A C 0.826
S C 0.781
P H 0.572
E H 0.793
H H 0.829
S H 0.854
L H 0.902
V H 0.873
C H 0.901
Q H 0.862
S H 0.831
L H 0.778
A H 0.705
R H 0.756
T H 0.488
L H 0.479
E H 0.410
V H 0.549
D H 0.537
D H 0.859
Q H 0.890
I H 0.900
R H 0.916
E H 0.935
K H 0.952
F H 0.974
E H 0.980
D H 0.978
A H 0.952
L H 0.919
K H 0.629
T H 0.498
L C 0.864
S C 0.879
V C 0.810
P C 0.631
M E 0.595
R E 0.723
I E 0.765
L E 0.641
P E 0.457
A C 0.531
Q C 0.538
L C 0.573
E C 0.523
E C 0.521
Q C 0.542
C C 0.499
R C 0.565
V C 0.821
END