# TARGET T0122 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0122.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 33.032 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.146 0.296 0.557 2 F 0.061 0.296 0.643 3 K 0.032 0.113 0.855 4 D 0.046 0.092 0.861 5 G 0.126 0.035 0.839 6 S 0.570 0.032 0.398 7 L 0.755 0.046 0.199 8 I 0.807 0.048 0.145 9 P 0.825 0.047 0.128 10 Y 0.865 0.057 0.078 11 L 0.860 0.057 0.083 12 T 0.742 0.065 0.193 13 A 0.489 0.073 0.438 14 G 0.208 0.056 0.736 15 D 0.073 0.042 0.885 16 P 0.029 0.070 0.901 17 D 0.012 0.060 0.928 18 K 0.004 0.767 0.229 19 Q 0.003 0.887 0.110 20 S 0.003 0.940 0.057 21 T 0.002 0.967 0.031 22 L 0.001 0.994 0.006 23 N 0.001 0.995 0.005 24 F 0.001 0.994 0.005 25 L 0.001 0.991 0.008 26 L 0.001 0.985 0.015 27 A 0.001 0.981 0.019 28 L 0.001 0.958 0.042 29 D 0.001 0.911 0.088 30 E 0.001 0.680 0.320 31 Y 0.002 0.047 0.950 32 A 0.019 0.017 0.964 33 G 0.107 0.004 0.889 34 A 0.951 0.009 0.040 35 I 0.982 0.007 0.010 36 E 0.958 0.017 0.025 37 L 0.889 0.031 0.081 38 G 0.268 0.034 0.698 39 I 0.033 0.002 0.965 40 P 0.038 0.028 0.934 41 F 0.097 0.038 0.865 42 S 0.068 0.071 0.861 43 D 0.032 0.049 0.919 44 P 0.024 0.489 0.486 45 I 0.049 0.446 0.504 46 A 0.039 0.478 0.482 47 D 0.034 0.262 0.704 48 G 0.036 0.114 0.850 49 K 0.171 0.217 0.613 50 T 0.357 0.367 0.277 51 I 0.409 0.432 0.160 52 Q 0.368 0.462 0.170 53 E 0.234 0.544 0.222 54 S 0.099 0.600 0.301 55 H 0.045 0.558 0.396 56 Y 0.003 0.962 0.035 57 R 0.004 0.946 0.051 58 A 0.001 0.969 0.030 59 L 0.001 0.960 0.039 60 K 0.001 0.946 0.053 61 N 0.002 0.758 0.240 62 G 0.003 0.035 0.962 63 F 0.015 0.005 0.980 64 K 0.056 0.029 0.915 65 L 0.005 0.934 0.061 66 R 0.001 0.979 0.020 67 E 0.001 0.990 0.010 68 A 0.001 0.991 0.008 69 F 0.001 0.995 0.004 70 W 0.001 0.996 0.003 71 I 0.001 0.996 0.004 72 V 0.001 0.995 0.005 73 K 0.001 0.993 0.007 74 E 0.001 0.986 0.013 75 F 0.001 0.964 0.034 76 R 0.002 0.914 0.084 77 R 0.002 0.592 0.406 78 H 0.006 0.172 0.822 79 S 0.029 0.113 0.858 80 S 0.072 0.045 0.883 81 T 0.220 0.042 0.738 82 P 0.463 0.015 0.522 83 I 0.922 0.019 0.059 84 V 0.965 0.021 0.014 85 L 0.954 0.035 0.011 86 M 0.923 0.053 0.024 87 T 0.714 0.134 0.153 88 Y 0.293 0.347 0.360 89 Y 0.122 0.465 0.412 90 N 0.069 0.409 0.522 91 P 0.048 0.688 0.264 92 I 0.024 0.817 0.160 93 Y 0.011 0.893 0.095 94 R 0.008 0.915 0.077 95 A 0.003 0.852 0.145 96 G 0.003 0.531 0.465 97 V 0.002 0.898 0.100 98 R 0.001 0.956 0.043 99 N 0.002 0.967 0.031 100 F 0.001 0.992 0.007 101 L 0.001 0.994 0.005 102 A 0.001 0.995 0.005 103 E 0.001 0.993 0.007 104 A 0.001 0.991 0.009 105 K 0.001 0.987 0.013 106 A 0.001 0.976 0.024 107 S 0.001 0.887 0.113 108 G 0.003 0.027 0.970 109 V 0.016 0.004 0.979 110 D 0.067 0.001 0.932 111 G 0.638 0.001 0.361 112 I 0.954 0.001 0.045 113 L 0.974 0.001 0.025 114 V 0.932 0.004 0.064 115 V 0.724 0.005 0.270 116 D 0.291 0.009 0.700 117 L 0.090 0.018 0.892 118 P 0.032 0.027 0.941 119 V 0.020 0.308 0.672 120 F 0.009 0.521 0.470 121 H 0.005 0.774 0.221 122 A 0.006 0.782 0.211 123 K 0.008 0.878 0.114 124 E 0.010 0.934 0.055 125 F 0.007 0.968 0.025 126 T 0.004 0.985 0.012 127 E 0.003 0.986 0.011 128 I 0.002 0.982 0.016 129 A 0.002 0.977 0.021 130 R 0.001 0.967 0.032 131 E 0.002 0.941 0.057 132 E 0.003 0.744 0.253 133 G 0.004 0.022 0.974 134 I 0.068 0.016 0.917 135 K 0.364 0.013 0.622 136 T 0.789 0.010 0.200 137 V 0.932 0.007 0.061 138 F 0.936 0.007 0.057 139 L 0.919 0.010 0.071 140 A 0.755 0.013 0.232 141 A 0.331 0.017 0.652 142 P 0.086 0.024 0.891 143 N 0.027 0.021 0.952 144 T 0.025 0.048 0.927 145 P 0.008 0.063 0.929 146 D 0.001 0.944 0.056 147 E 0.001 0.977 0.022 148 R 0.001 0.993 0.007 149 L 0.001 0.995 0.004 150 K 0.001 0.997 0.003 151 V 0.001 0.997 0.003 152 I 0.001 0.994 0.005 153 D 0.002 0.989 0.009 154 D 0.002 0.982 0.017 155 M 0.004 0.921 0.076 156 T 0.013 0.539 0.448 157 T 0.015 0.218 0.767 158 G 0.043 0.013 0.944 159 F 0.755 0.004 0.241 160 V 0.957 0.001 0.042 161 Y 0.992 0.001 0.007 162 L 0.994 0.002 0.005 163 V 0.969 0.003 0.028 164 S 0.815 0.006 0.179 165 L 0.364 0.030 0.606 166 Y 0.182 0.060 0.758 167 G 0.096 0.024 0.880 168 T 0.223 0.018 0.759 169 T 0.423 0.037 0.541 170 G 0.264 0.094 0.642 171 A 0.144 0.134 0.722 172 R 0.102 0.181 0.717 173 E 0.069 0.258 0.673 174 E 0.060 0.265 0.675 175 I 0.056 0.338 0.607 176 P 0.022 0.401 0.577 177 K 0.009 0.691 0.300 178 T 0.005 0.778 0.217 179 A 0.001 0.934 0.064 180 Y 0.001 0.970 0.029 181 D 0.001 0.989 0.011 182 L 0.001 0.995 0.005 183 L 0.001 0.996 0.003 184 R 0.001 0.998 0.002 185 R 0.001 0.997 0.003 186 A 0.001 0.995 0.004 187 K 0.001 0.990 0.008 188 R 0.001 0.979 0.020 189 I 0.005 0.932 0.063 190 C 0.014 0.600 0.386 191 R 0.017 0.068 0.915 192 N 0.059 0.024 0.917 193 K 0.290 0.007 0.703 194 V 0.850 0.007 0.143 195 A 0.912 0.007 0.081 196 V 0.875 0.009 0.116 197 G 0.711 0.012 0.277 198 F 0.489 0.018 0.493 199 G 0.399 0.020 0.581 200 V 0.219 0.017 0.763 201 S 0.110 0.013 0.877 202 K 0.027 0.031 0.942 203 R 0.001 0.975 0.024 204 E 0.001 0.990 0.010 205 H 0.001 0.992 0.008 206 V 0.001 0.995 0.005 207 V 0.001 0.995 0.005 208 S 0.001 0.993 0.007 209 L 0.001 0.985 0.014 210 L 0.001 0.968 0.031 211 K 0.001 0.930 0.068 212 E 0.004 0.799 0.196 213 G 0.014 0.251 0.734 214 A 0.020 0.071 0.908 215 N 0.046 0.027 0.927 216 G 0.395 0.028 0.577 217 V 0.802 0.020 0.178 218 V 0.882 0.018 0.100 219 V 0.726 0.084 0.190 220 G 0.396 0.276 0.328 221 S 0.124 0.773 0.103 222 A 0.030 0.955 0.015 223 L 0.016 0.978 0.005 224 V 0.008 0.989 0.003 225 K 0.005 0.993 0.003 226 I 0.003 0.993 0.004 227 I 0.001 0.992 0.007 228 G 0.001 0.980 0.019 229 E 0.001 0.938 0.061 230 K 0.004 0.665 0.332 231 G 0.007 0.282 0.711 232 R 0.011 0.341 0.648 233 E 0.009 0.505 0.485 234 A 0.006 0.799 0.195 235 T 0.005 0.910 0.085 236 E 0.003 0.950 0.047 237 F 0.003 0.964 0.034 238 L 0.002 0.973 0.024 239 K 0.002 0.977 0.021 240 K 0.001 0.982 0.017 241 K 0.002 0.978 0.020 242 V 0.003 0.972 0.025 243 E 0.003 0.962 0.035 244 E 0.009 0.923 0.068 245 L 0.010 0.884 0.107 246 L 0.015 0.772 0.213 247 G 0.012 0.627 0.361 248 I 0.011 0.088 0.901