PFRMAT SS
TARGET T0122
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0122.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 33.032
METHOD
MODEL 1
M C 0.557
F C 0.643
K C 0.855
D C 0.861
G C 0.839
S E 0.570
L E 0.755
I E 0.807
P E 0.825
Y E 0.865
L E 0.860
T E 0.742
A E 0.489
G C 0.736
D C 0.885
P C 0.901
D C 0.928
K H 0.767
Q H 0.887
S H 0.940
T H 0.967
L H 0.994
N H 0.995
F H 0.994
L H 0.991
L H 0.985
A H 0.981
L H 0.958
D H 0.911
E H 0.680
Y C 0.950
A C 0.964
G C 0.889
A E 0.951
I E 0.982
E E 0.958
L E 0.889
G C 0.698
I C 0.965
P C 0.934
F C 0.865
S C 0.861
D C 0.919
P H 0.489
I C 0.504
A C 0.482
D C 0.704
G C 0.850
K C 0.613
T H 0.367
I H 0.432
Q H 0.462
E H 0.544
S H 0.600
H H 0.558
Y H 0.962
R H 0.946
A H 0.969
L H 0.960
K H 0.946
N H 0.758
G C 0.962
F C 0.980
K C 0.915
L H 0.934
R H 0.979
E H 0.990
A H 0.991
F H 0.995
W H 0.996
I H 0.996
V H 0.995
K H 0.993
E H 0.986
F H 0.964
R H 0.914
R H 0.592
H C 0.822
S C 0.858
S C 0.883
T C 0.738
P C 0.522
I E 0.922
V E 0.965
L E 0.954
M E 0.923
T E 0.714
Y C 0.360
Y H 0.465
N C 0.522
P H 0.688
I H 0.817
Y H 0.893
R H 0.915
A H 0.852
G H 0.531
V H 0.898
R H 0.956
N H 0.967
F H 0.992
L H 0.994
A H 0.995
E H 0.993
A H 0.991
K H 0.987
A H 0.976
S H 0.887
G C 0.970
V C 0.979
D C 0.932
G E 0.638
I E 0.954
L E 0.974
V E 0.932
V E 0.724
D C 0.700
L C 0.892
P C 0.941
V C 0.672
F H 0.521
H H 0.774
A H 0.782
K H 0.878
E H 0.934
F H 0.968
T H 0.985
E H 0.986
I H 0.982
A H 0.977
R H 0.967
E H 0.941
E H 0.744
G C 0.974
I C 0.917
K C 0.622
T E 0.789
V E 0.932
F E 0.936
L E 0.919
A E 0.755
A C 0.652
P C 0.891
N C 0.952
T C 0.927
P C 0.929
D H 0.944
E H 0.977
R H 0.993
L H 0.995
K H 0.997
V H 0.997
I H 0.994
D H 0.989
D H 0.982
M H 0.921
T H 0.539
T C 0.767
G C 0.944
F E 0.755
V E 0.957
Y E 0.992
L E 0.994
V E 0.969
S E 0.815
L C 0.606
Y C 0.758
G C 0.880
T C 0.759
T C 0.541
G C 0.642
A C 0.722
R C 0.717
E C 0.673
E C 0.675
I C 0.607
P C 0.577
K H 0.691
T H 0.778
A H 0.934
Y H 0.970
D H 0.989
L H 0.995
L H 0.996
R H 0.998
R H 0.997
A H 0.995
K H 0.990
R H 0.979
I H 0.932
C H 0.600
R C 0.915
N C 0.917
K C 0.703
V E 0.850
A E 0.912
V E 0.875
G E 0.711
F C 0.493
G C 0.581
V C 0.763
S C 0.877
K C 0.942
R H 0.975
E H 0.990
H H 0.992
V H 0.995
V H 0.995
S H 0.993
L H 0.985
L H 0.968
K H 0.930
E H 0.799
G C 0.734
A C 0.908
N C 0.927
G C 0.577
V E 0.802
V E 0.882
V E 0.726
G E 0.396
S H 0.773
A H 0.955
L H 0.978
V H 0.989
K H 0.993
I H 0.993
I H 0.992
G H 0.980
E H 0.938
K H 0.665
G C 0.711
R C 0.648
E H 0.505
A H 0.799
T H 0.910
E H 0.950
F H 0.964
L H 0.973
K H 0.977
K H 0.982
K H 0.978
V H 0.972
E H 0.962
E H 0.923
L H 0.884
L H 0.772
G H 0.627
I C 0.901
END