# TARGET T0121-cterm # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0121-cterm.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 51.0346 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 P 0.049 0.058 0.893 2 A 0.099 0.089 0.812 3 N 0.189 0.079 0.732 4 T 0.386 0.093 0.520 5 F 0.690 0.056 0.253 6 V 0.809 0.057 0.134 7 A 0.810 0.066 0.124 8 G 0.867 0.044 0.089 9 F 0.869 0.037 0.094 10 I 0.824 0.027 0.149 11 G 0.609 0.018 0.372 12 S 0.202 0.018 0.780 13 P 0.043 0.034 0.923 14 P 0.037 0.036 0.927 15 M 0.251 0.032 0.718 16 N 0.470 0.014 0.517 17 F 0.788 0.008 0.204 18 L 0.794 0.007 0.199 19 D 0.758 0.010 0.232 20 A 0.884 0.005 0.111 21 I 0.904 0.006 0.090 22 V 0.863 0.005 0.132 23 T 0.568 0.013 0.419 24 E 0.115 0.030 0.855 25 D 0.115 0.042 0.844 26 G 0.699 0.026 0.275 27 F 0.872 0.013 0.115 28 V 0.890 0.009 0.101 29 D 0.757 0.010 0.233 30 F 0.350 0.023 0.627 31 G 0.135 0.022 0.843 32 E 0.351 0.011 0.637 33 F 0.805 0.006 0.190 34 R 0.881 0.005 0.114 35 L 0.899 0.006 0.094 36 K 0.781 0.009 0.211 37 L 0.529 0.012 0.459 38 L 0.204 0.019 0.777 39 P 0.056 0.199 0.745 40 D 0.051 0.286 0.663 41 Q 0.151 0.399 0.449 42 F 0.289 0.372 0.340 43 E 0.440 0.314 0.246 44 V 0.446 0.277 0.277 45 L 0.340 0.296 0.364 46 G 0.328 0.220 0.452 47 E 0.279 0.214 0.507 48 L 0.296 0.148 0.555 49 G 0.191 0.061 0.748 50 Y 0.131 0.045 0.824 51 V 0.053 0.043 0.904 52 G 0.046 0.014 0.941 53 R 0.313 0.008 0.679 54 E 0.626 0.003 0.371 55 V 0.912 0.001 0.087 56 I 0.965 0.001 0.034 57 F 0.965 0.002 0.033 58 G 0.959 0.001 0.039 59 I 0.811 0.002 0.188 60 R 0.326 0.003 0.671 61 P 0.040 0.647 0.314 62 E 0.010 0.794 0.196 63 D 0.019 0.843 0.137 64 L 0.076 0.681 0.243 65 Y 0.149 0.553 0.298 66 D 0.184 0.440 0.376 67 A 0.073 0.240 0.687 68 M 0.040 0.348 0.611 69 F 0.053 0.372 0.575 70 A 0.096 0.262 0.642 71 R 0.094 0.178 0.729 72 V 0.088 0.172 0.740 73 R 0.086 0.143 0.771 74 V 0.096 0.104 0.800 75 P 0.072 0.071 0.857 76 G 0.081 0.060 0.859 77 E 0.217 0.040 0.743 78 N 0.534 0.022 0.445 79 L 0.741 0.009 0.251 80 V 0.850 0.004 0.146 81 R 0.926 0.003 0.072 82 A 0.949 0.005 0.046 83 V 0.971 0.004 0.026 84 V 0.949 0.013 0.038 85 E 0.921 0.026 0.053 86 I 0.900 0.052 0.048 87 V 0.829 0.126 0.045 88 E 0.630 0.269 0.101 89 N 0.371 0.368 0.261 90 L 0.226 0.220 0.554 91 G 0.062 0.039 0.899 92 S 0.144 0.029 0.827 93 E 0.427 0.008 0.565 94 R 0.758 0.002 0.240 95 I 0.961 0.001 0.039 96 V 0.990 0.001 0.009 97 H 0.994 0.001 0.005 98 L 0.991 0.001 0.008 99 R 0.969 0.001 0.031 100 V 0.812 0.001 0.187 101 G 0.187 0.002 0.810 102 G 0.158 0.003 0.839 103 V 0.713 0.002 0.286 104 T 0.923 0.001 0.076 105 F 0.983 0.001 0.017 106 V 0.992 0.001 0.007 107 G 0.985 0.001 0.014 108 A 0.950 0.001 0.049 109 F 0.766 0.001 0.232 110 R 0.243 0.005 0.752 111 S 0.055 0.058 0.887 112 E 0.073 0.104 0.823 113 S 0.190 0.135 0.675 114 R 0.294 0.074 0.632 115 V 0.334 0.049 0.617 116 R 0.207 0.042 0.751 117 E 0.046 0.053 0.901 118 G 0.044 0.004 0.952 119 V 0.621 0.003 0.376 120 E 0.882 0.001 0.117 121 V 0.941 0.001 0.058 122 D 0.954 0.001 0.045 123 V 0.958 0.002 0.040 124 V 0.948 0.001 0.051 125 F 0.830 0.001 0.169 126 D 0.414 0.001 0.586 127 M 0.155 0.173 0.672 128 K 0.109 0.195 0.696 129 K 0.406 0.139 0.455 130 I 0.722 0.032 0.246 131 H 0.913 0.010 0.077 132 I 0.964 0.005 0.031 133 F 0.891 0.005 0.104 134 D 0.454 0.012 0.534 135 K 0.029 0.198 0.772 136 T 0.008 0.230 0.762 137 T 0.013 0.198 0.789 138 G 0.032 0.332 0.636 139 K 0.098 0.388 0.514 140 A 0.179 0.330 0.490 141 I 0.126 0.222 0.652 142 F 0.033 0.031 0.936