PFRMAT SS
TARGET T0121-cterm
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0121-cterm.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 51.0346
METHOD
MODEL 1
P C 0.893
A C 0.812
N C 0.732
T C 0.520
F E 0.690
V E 0.809
A E 0.810
G E 0.867
F E 0.869
I E 0.824
G E 0.609
S C 0.780
P C 0.923
P C 0.927
M C 0.718
N C 0.517
F E 0.788
L E 0.794
D E 0.758
A E 0.884
I E 0.904
V E 0.863
T E 0.568
E C 0.855
D C 0.844
G E 0.699
F E 0.872
V E 0.890
D E 0.757
F C 0.627
G C 0.843
E C 0.637
F E 0.805
R E 0.881
L E 0.899
K E 0.781
L E 0.529
L C 0.777
P C 0.745
D C 0.663
Q C 0.449
F H 0.372
E E 0.440
V E 0.446
L C 0.364
G C 0.452
E C 0.507
L C 0.555
G C 0.748
Y C 0.824
V C 0.904
G C 0.941
R C 0.679
E E 0.626
V E 0.912
I E 0.965
F E 0.965
G E 0.959
I E 0.811
R C 0.671
P H 0.647
E H 0.794
D H 0.843
L H 0.681
Y H 0.553
D H 0.440
A C 0.687
M C 0.611
F C 0.575
A C 0.642
R C 0.729
V C 0.740
R C 0.771
V C 0.800
P C 0.857
G C 0.859
E C 0.743
N E 0.534
L E 0.741
V E 0.850
R E 0.926
A E 0.949
V E 0.971
V E 0.949
E E 0.921
I E 0.900
V E 0.829
E E 0.630
N E 0.371
L C 0.554
G C 0.899
S C 0.827
E C 0.565
R E 0.758
I E 0.961
V E 0.990
H E 0.994
L E 0.991
R E 0.969
V E 0.812
G C 0.810
G C 0.839
V E 0.713
T E 0.923
F E 0.983
V E 0.992
G E 0.985
A E 0.950
F E 0.766
R C 0.752
S C 0.887
E C 0.823
S C 0.675
R C 0.632
V C 0.617
R C 0.751
E C 0.901
G C 0.952
V E 0.621
E E 0.882
V E 0.941
D E 0.954
V E 0.958
V E 0.948
F E 0.830
D C 0.586
M C 0.672
K C 0.696
K C 0.455
I E 0.722
H E 0.913
I E 0.964
F E 0.891
D C 0.534
K C 0.772
T C 0.762
T C 0.789
G C 0.636
K C 0.514
A C 0.490
I C 0.652
F C 0.936
END