PFRMAT SS TARGET T0121 AUTHOR 3670-4530-6947 METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 10 METHOD 7 10 METHOD 5 10 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment T0121.t2k.a2m.gz METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 1448.16 METHOD MODEL 1 M C 0.904 A C 0.735 G E 0.694 V E 0.923 R E 0.959 L E 0.960 V E 0.862 D E 0.790 V E 0.883 W E 0.936 K E 0.950 V E 0.886 F E 0.630 G C 0.884 E C 0.892 V E 0.544 T E 0.823 A E 0.900 V E 0.853 R E 0.699 E E 0.735 L E 0.774 S E 0.878 L E 0.963 E E 0.950 V E 0.865 K C 0.537 D C 0.953 G C 0.956 E E 0.597 F E 0.842 M E 0.970 I E 0.987 L E 0.975 L E 0.928 G E 0.597 P C 0.847 S C 0.902 G C 0.731 C C 0.614 G H 0.521 K H 0.723 T H 0.907 T H 0.962 T H 0.974 L H 0.979 R H 0.980 M H 0.962 I H 0.938 A H 0.903 G C 0.816 L C 0.902 E C 0.807 E C 0.841 P C 0.845 S C 0.848 R C 0.764 G C 0.559 Q E 0.829 I E 0.959 Y E 0.941 I E 0.824 G C 0.627 D C 0.846 R C 0.592 L C 0.560 V C 0.649 A C 0.689 D C 0.645 P C 0.702 E C 0.708 K H 0.746 G H 0.839 I H 0.880 F H 0.878 V H 0.903 P H 0.869 P H 0.799 K H 0.623 D C 0.595 R C 0.694 D C 0.596 I E 0.762 A E 0.874 M E 0.874 V E 0.733 F C 0.504 Q C 0.785 S C 0.866 Y C 0.653 A C 0.659 L C 0.649 Y C 0.893 P C 0.886 H C 0.865 M C 0.755 T C 0.680 V H 0.835 Y H 0.897 D H 0.942 N H 0.873 I H 0.898 A H 0.872 F H 0.827 P H 0.641 L H 0.674 K H 0.666 L H 0.571 R C 0.533 K C 0.938 V C 0.927 P C 0.908 R H 0.924 Q H 0.963 E H 0.973 I H 0.970 D H 0.979 Q H 0.984 R H 0.983 V H 0.988 R H 0.990 E H 0.985 V H 0.977 A H 0.965 E H 0.960 L H 0.952 L H 0.834 G C 0.955 L C 0.912 T C 0.793 E C 0.506 L H 0.630 L H 0.564 N C 0.554 R C 0.568 K C 0.675 P C 0.601 R C 0.526 E C 0.493 L C 0.568 S C 0.685 G C 0.564 G H 0.733 Q H 0.888 R H 0.961 Q H 0.988 R H 0.995 V H 0.999 A H 0.999 L H 0.999 G H 0.999 R H 0.998 A H 0.993 I H 0.977 V H 0.920 R H 0.678 K C 0.978 P C 0.957 Q C 0.810 V E 0.905 F E 0.990 L E 0.988 M E 0.932 D E 0.514 E C 0.855 P C 0.863 L C 0.750 S C 0.739 N C 0.736 L C 0.877 D C 0.950 A H 0.963 K H 0.984 L H 0.992 R H 0.994 V H 0.995 R H 0.997 M H 0.996 R H 0.995 A H 0.995 E H 0.989 L H 0.979 K H 0.978 K H 0.966 L H 0.945 Q H 0.929 R H 0.883 Q H 0.749 L C 0.653 G C 0.993 V C 0.930 T E 0.851 T E 0.978 I E 0.992 Y E 0.986 V E 0.939 T E 0.664 H C 0.784 D C 0.868 Q H 0.863 V H 0.936 E H 0.959 A H 0.955 M H 0.938 T H 0.902 M H 0.800 G C 0.503 D C 0.653 R E 0.551 I E 0.895 A E 0.970 V E 0.979 M E 0.894 N E 0.517 R C 0.926 G C 0.915 V E 0.786 L E 0.949 Q E 0.927 Q E 0.859 V E 0.502 G C 0.837 S C 0.898 P H 0.946 D H 0.967 E H 0.965 V H 0.920 Y H 0.868 D H 0.732 K C 0.526 P C 0.728 A C 0.847 N C 0.794 T C 0.630 F C 0.505 V C 0.393 A C 0.390 G C 0.437 F C 0.518 I C 0.663 G C 0.746 S C 0.779 P C 0.859 P C 0.809 M C 0.724 N C 0.608 F C 0.486 L H 0.453 D H 0.425 A C 0.443 I C 0.498 V C 0.578 T C 0.750 E C 0.629 D C 0.618 G C 0.533 F C 0.515 V C 0.478 D C 0.489 F C 0.558 G C 0.578 E C 0.555 F C 0.508 R C 0.489 L C 0.508 K C 0.529 L C 0.590 L C 0.662 P C 0.710 D C 0.706 Q C 0.632 F H 0.540 E H 0.640 V H 0.719 L H 0.770 G H 0.789 E H 0.779 L H 0.764 G H 0.691 Y H 0.633 V H 0.517 G H 0.510 R H 0.582 E H 0.572 V H 0.554 I H 0.503 F H 0.466 G C 0.536 I C 0.606 R C 0.704 P C 0.635 E C 0.604 D C 0.574 L C 0.590 Y C 0.582 D C 0.545 A C 0.498 M C 0.492 F C 0.511 A C 0.560 R C 0.612 V C 0.598 R C 0.612 V C 0.581 P C 0.642 G C 0.667 E C 0.619 N C 0.500 L C 0.445 V C 0.466 R C 0.506 A C 0.541 V C 0.527 V C 0.442 E C 0.457 I C 0.430 V C 0.443 E C 0.491 N C 0.619 L C 0.763 G C 0.879 S C 0.857 E C 0.832 R C 0.662 I E 0.456 V E 0.574 H E 0.629 L E 0.547 R C 0.474 V C 0.492 G C 0.412 G H 0.420 V H 0.426 T E 0.426 F E 0.527 V E 0.528 G E 0.591 A E 0.661 F E 0.627 R C 0.583 S C 0.810 E C 0.654 S E 0.447 R E 0.656 V E 0.698 R E 0.669 E C 0.565 G C 0.871 V C 0.796 E C 0.589 V E 0.716 D E 0.828 V E 0.907 V E 0.848 F E 0.711 D C 0.539 M C 0.671 K C 0.682 K C 0.532 I E 0.505 H E 0.721 I E 0.759 F E 0.574 D C 0.766 K C 0.595 T C 0.571 T C 0.551 G H 0.568 K H 0.526 A H 0.463 I C 0.586 F C 0.875 END