PFRMAT SS
TARGET T0121
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD For the FIRST 230 residues:
METHOD The input amino acid frequencies were determined from
METHOD alignment T0121.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 1448.16
METHOD
METHOD For the remaining residues:
METHOD The input amino acid frequencies were determined from
METHOD alignment T0121-cterm.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 51.0346
MODEL 1
M C 0.904
A C 0.735
G E 0.694
V E 0.923
R E 0.959
L E 0.960
V E 0.862
D E 0.790
V E 0.883
W E 0.936
K E 0.950
V E 0.886
F E 0.630
G C 0.884
E C 0.892
V E 0.544
T E 0.823
A E 0.900
V E 0.853
R E 0.699
E E 0.735
L E 0.774
S E 0.878
L E 0.963
E E 0.950
V E 0.865
K C 0.537
D C 0.953
G C 0.956
E E 0.597
F E 0.842
M E 0.970
I E 0.987
L E 0.975
L E 0.928
G E 0.597
P C 0.847
S C 0.902
G C 0.731
C C 0.614
G H 0.521
K H 0.723
T H 0.907
T H 0.962
T H 0.974
L H 0.979
R H 0.980
M H 0.962
I H 0.938
A H 0.903
G C 0.816
L C 0.902
E C 0.807
E C 0.841
P C 0.845
S C 0.848
R C 0.764
G C 0.559
Q E 0.829
I E 0.959
Y E 0.941
I E 0.824
G C 0.627
D C 0.846
R C 0.592
L C 0.560
V C 0.649
A C 0.689
D C 0.645
P C 0.702
E C 0.708
K H 0.746
G H 0.839
I H 0.880
F H 0.878
V H 0.903
P H 0.869
P H 0.799
K H 0.623
D C 0.595
R C 0.694
D C 0.596
I E 0.762
A E 0.874
M E 0.874
V E 0.733
F C 0.504
Q C 0.785
S C 0.866
Y C 0.653
A C 0.659
L C 0.649
Y C 0.893
P C 0.886
H C 0.865
M C 0.755
T C 0.680
V H 0.835
Y H 0.897
D H 0.942
N H 0.873
I H 0.898
A H 0.872
F H 0.827
P H 0.641
L H 0.674
K H 0.666
L H 0.571
R C 0.533
K C 0.938
V C 0.927
P C 0.908
R H 0.924
Q H 0.963
E H 0.973
I H 0.970
D H 0.979
Q H 0.984
R H 0.983
V H 0.988
R H 0.990
E H 0.985
V H 0.977
A H 0.965
E H 0.960
L H 0.952
L H 0.834
G C 0.955
L C 0.912
T C 0.793
E C 0.506
L H 0.630
L H 0.564
N C 0.554
R C 0.568
K C 0.675
P C 0.601
R C 0.526
E C 0.493
L C 0.568
S C 0.685
G C 0.564
G H 0.733
Q H 0.888
R H 0.961
Q H 0.988
R H 0.995
V H 0.999
A H 0.999
L H 0.999
G H 0.999
R H 0.998
A H 0.993
I H 0.977
V H 0.920
R H 0.678
K C 0.978
P C 0.957
Q C 0.810
V E 0.905
F E 0.990
L E 0.988
M E 0.932
D E 0.514
E C 0.855
P C 0.863
L C 0.750
S C 0.739
N C 0.736
L C 0.877
D C 0.950
A H 0.963
K H 0.984
L H 0.992
R H 0.994
V H 0.995
R H 0.997
M H 0.996
R H 0.995
A H 0.995
E H 0.989
L H 0.979
K H 0.978
K H 0.966
L H 0.945
Q H 0.929
R H 0.883
Q H 0.749
L C 0.653
G C 0.993
V C 0.930
T E 0.851
T E 0.978
I E 0.992
Y E 0.986
V E 0.939
T E 0.664
H C 0.784
D C 0.868
Q H 0.863
V H 0.936
E H 0.959
A H 0.955
M H 0.938
T H 0.902
M H 0.800
G C 0.503
D C 0.653
R E 0.551
I E 0.895
A E 0.970
V E 0.979
M E 0.894
N E 0.517
R C 0.926
G C 0.915
V E 0.786
L E 0.949
Q E 0.927
Q E 0.859
V E 0.502
G C 0.837
S C 0.898
P H 0.946
D H 0.967
E H 0.965
V H 0.920
Y H 0.868
D H 0.732
K C 0.526
P C 0.893
A C 0.812
N C 0.732
T C 0.520
F E 0.690
V E 0.809
A E 0.810
G E 0.867
F E 0.869
I E 0.824
G E 0.609
S C 0.780
P C 0.923
P C 0.927
M C 0.718
N C 0.517
F E 0.788
L E 0.794
D E 0.758
A E 0.884
I E 0.904
V E 0.863
T E 0.568
E C 0.855
D C 0.844
G E 0.699
F E 0.872
V E 0.890
D E 0.757
F C 0.627
G C 0.843
E C 0.637
F E 0.805
R E 0.881
L E 0.899
K E 0.781
L E 0.529
L C 0.777
P C 0.745
D C 0.663
Q C 0.449
F H 0.372
E E 0.440
V E 0.446
L C 0.364
G C 0.452
E C 0.507
L C 0.555
G C 0.748
Y C 0.824
V C 0.904
G C 0.941
R C 0.679
E E 0.626
V E 0.912
I E 0.965
F E 0.965
G E 0.959
I E 0.811
R C 0.671
P H 0.647
E H 0.794
D H 0.843
L H 0.681
Y H 0.553
D H 0.440
A C 0.687
M C 0.611
F C 0.575
A C 0.642
R C 0.729
V C 0.740
R C 0.771
V C 0.800
P C 0.857
G C 0.859
E C 0.743
N E 0.534
L E 0.741
V E 0.850
R E 0.926
A E 0.949
V E 0.971
V E 0.949
E E 0.921
I E 0.900
V E 0.829
E E 0.630
N E 0.371
L C 0.554
G C 0.899
S C 0.827
E C 0.565
R E 0.758
I E 0.961
V E 0.990
H E 0.994
L E 0.991
R E 0.969
V E 0.812
G C 0.810
G C 0.839
V E 0.713
T E 0.923
F E 0.983
V E 0.992
G E 0.985
A E 0.950
F E 0.766
R C 0.752
S C 0.887
E C 0.823
S C 0.675
R C 0.632
V C 0.617
R C 0.751
E C 0.901
G C 0.952
V E 0.621
E E 0.882
V E 0.941
D E 0.954
V E 0.958
V E 0.948
F E 0.830
D C 0.586
M C 0.672
K C 0.696
K C 0.455
I E 0.722
H E 0.913
I E 0.964
F E 0.891
D C 0.534
K C 0.772
T C 0.762
T C 0.789
G C 0.636
K C 0.514
A C 0.490
I C 0.652
F C 0.936
END