PFRMAT SS
TARGET T0120-116-210
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0120-116-210.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 1.99236
METHOD
MODEL 1
V C 0.752
E C 0.790
N C 0.878
P H 0.929
A H 0.966
E H 0.982
V H 0.985
I H 0.992
R H 0.990
E H 0.991
L H 0.983
I H 0.974
C H 0.970
Y H 0.945
C H 0.880
L H 0.875
D H 0.672
T H 0.659
I H 0.694
A H 0.765
E H 0.787
N H 0.688
Q H 0.712
A H 0.760
K H 0.797
N H 0.810
E H 0.778
H H 0.705
L H 0.767
Q H 0.819
K H 0.885
E H 0.899
N H 0.845
E H 0.913
R H 0.855
L H 0.844
L H 0.742
R H 0.535
D C 0.529
W H 0.905
N H 0.862
D H 0.848
V H 0.541
Q H 0.589
G H 0.507
R H 0.497
F H 0.796
E H 0.776
K H 0.754
C H 0.690
V H 0.522
S C 0.518
A H 0.955
K H 0.952
E H 0.961
A H 0.931
L H 0.924
E H 0.886
T H 0.819
D H 0.819
L H 0.811
Y H 0.761
K H 0.661
R E 0.376
F E 0.711
I E 0.840
L E 0.912
V E 0.904
L E 0.808
N C 0.580
E C 0.761
K C 0.705
K C 0.493
T H 0.440
K H 0.561
I H 0.616
R H 0.761
S H 0.780
L H 0.794
H H 0.779
N H 0.921
K H 0.922
L H 0.913
L H 0.915
N H 0.908
A H 0.935
A H 0.936
Q H 0.953
E H 0.936
R H 0.894
E H 0.820
K H 0.717
D C 0.485
I C 0.769
K C 0.952
END