Sequence numbers correspond to the following labels:

1. • T0120-116-210 DNA repair protein XRCC4, human
2. • gi|4507945|ref|NP_003392.1|_116:210 X-ray repair complementing defective repair in Chinese hamster cells 4 (Homo sapiens)
   • gi|1151115|gb|AAC50339.1| (U40622) XRCC4 [Homo sapiens] (Homo sapiens)
   • gi|5706611|gb|AAD47297.1| (AF055285) DNA repair protein XRCC4 [Homo sapiens] (Homo sapiens)
   • gi|1586944|prf||2205251A XRCC4 gene [Homo sapiens] (Homo sapiens)
3. • gi|5706612|gb|AAD47298.1|_116:210 (AF055285) DNA repair protein XRCC4 [Homo sapiens] (Homo sapiens)
4. • gi|4507945|ref|NP_003392.1|_116:210 X-ray repair complementing defective repair in Chinese hamster cells 4 (Homo sapiens)
   • gi|1151115|gb|AAC50339.1| (U40622) XRCC4 [Homo sapiens] (Homo sapiens)
   • gi|5706611|gb|AAD47297.1| (AF055285) DNA repair protein XRCC4 [Homo sapiens] (Homo sapiens)
   • gi|1586944|prf||2205251A XRCC4 gene [Homo sapiens] (Homo sapiens)
5. • gi|5706612|gb|AAD47298.1|_116:210 (AF055285) DNA repair protein XRCC4 [Homo sapiens] (Homo sapiens)
6. • gi|7505889|pir||T23652_3:63 hypothetical protein M01F1.1 - Caenorhabditis elegans (Caenorhabditis elegans)
   • gi|3420844|gb|AAD03024.1| (AF082012) UDP-N-acetylglucosamine:a-3-D-mannoside b-1,2-N-acetylglucosaminyltransferase I [Caenorhabditis elegans] (Caenorhabditis elegans)
   • gi|3878567|emb|CAA86513.1| (Z46381) similar to alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [Caenorhabditis elegans] (Caenorhabditis elegans)
7. • gi|82589|pir||JT0902_51:104 chaperonin 60 beta - wheat (fragment) (Triticum aestivum)
8. • gi|2493650|sp|Q43831|RUBB_SECCE_394:447 RUBISCO SUBUNIT BINDING-PROTEIN BETA SUBUNIT (60 KD CHAPERONIN BETA SUBUNIT) (CPN-60 BETA) (Secale cereale)
   • gi|1167858|emb|CAA93139.1| (Z68903) chaperonin [Secale cereale] (Secale cereale)
9. • gi|3056589|gb|AAC13900.1|_123:171 (AC004255) T1F9.10 [Arabidopsis thaliana] (Arabidopsis thaliana)
10. • gi|81600|pir||PS0374_73:125 chaperonin 60 beta (clone bX) - Arabidopsis thaliana (fragment) (Arabidopsis thaliana)
11. • gi|7248401|dbj|BAA92724.1|_496:549 (AP001389) ESTs C99033(E4350),C99032(E4350),D46006(S10372), D47177(S12347),C28582(C61678),C27203(C51329) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana chromosome I BAC T5A14 genomic sequence; 60 KD Chaperonin Beta subuni> (Oryza sativa)
12. • gi|9294200|dbj|BAB02102.1|_165:213 (AB026655) gb|AAC13900.1~gene_id:MXC7.14~similar to unknown protein [Arabidopsis thaliana] (Arabidopsis thaliana)
    • gi|9800643|gb|AAF91285.2|AF233528_1 (AF233528) putative double strand break repair protein [Arabidopsis thaliana] (Arabidopsis thaliana)
13. • gi|134103|sp|P21240|RUBB_ARATH_496:548 RUBISCO SUBUNIT BINDING-PROTEIN BETA SUBUNIT PRECURSOR (60 KD CHAPERONIN BETA SUBUNIT) (CPN-60 BETA) (Arabidopsis thaliana)
14. • gi|4204266|gb|AAD10647.1|_496:548 (AC005223) 52263 [Arabidopsis thaliana] (Arabidopsis thaliana)
15. • gi|9280299|dbj|BAB01754.1|_492:544 (AP000603) GloEL protein; chaperonin, 60 kDa [Arabidopsis thaliana] (Arabidopsis thaliana)
16. • gi|134104|sp|P21241|RUBB_BRANA_496:548 RUBISCO SUBUNIT BINDING-PROTEIN BETA SUBUNIT PRECURSOR (60 KD CHAPERONIN BETA SUBUNIT) (CPN-60 BETA) (Brassica napus)
    • gi|99800|pir||PW0007 chaperonin 62.5K beta chain - rape (Brassica napus)
    • gi|167117|gb|AAA32980.1| (M35600) 60-kDa beta-polypeptide of plastid chaperonin-60 precursor [Brassica napus] (Brassica napus)
17. • gi|81601|pir||JT0901_496:548 chaperonin 60 beta precursor - Arabidopsis thaliana (Arabidopsis thaliana)
18. • gi|2688966|gb|AAB88887.1|_375:417 (AF027979) carnitine acetyl transferase [Pyricularia grisea] (Pyricularia grisea)
19. • gi|7800848|emb|CAB91207.1|_185:232 (AL355925) related to mitotic apparatus protein p62 [Neurospora crassa] (Neurospora crassa)
20. • gi|9506879|ref|NP_062191.1|_324:350 v-maf musculoaponeurotic fibrosarcoma (avian) oncogene homolog (c-maf) (Rattus norvegicus)
    • gi|1708913|sp|P54844|MAF2_RAT TRANSCRIPTION FACTOR MAF2 (PROTO-ONCOGENE C-MAF) (Rattus norvegicus)
    • gi|1326235|gb|AAB50063.1| (U56242) Maf2 [Rattus norvegicus] (Rattus norvegicus)
21. • gi|1708912|sp|P54843|MAF2_MOUSE_325:351 TRANSCRIPTION FACTOR MAF2 (PROTO-ONCOGENE C-MAF) (Mus musculus)
    • gi|7438325|pir||I57555 c-Maf protein - mouse (Mus sp.)
    • gi|807055|gb|AAB32820.1| (S74567) c-Maf protein=L7 promoter binding protein/v-Maf protein homolog {proto-oncogene} [mice, BALB/c, cerebellum, Peptide, 370 aa] [Mus sp.] (Mus sp.)
22. • gi|209628|gb|AAA42377.1|_593:619 (M26769) AS42-specific fusion protein [Avian musculoaponeurotic fibrosarcoma virus] (Avian musculoaponeurotic fibrosarcoma virus)
23. • gi|1060865|dbj|BAA05935.1|_314:340 (D28596) c-Maf short form [Gallus gallus] (Gallus gallus)
24. • gi|516682|dbj|BAA05937.1|_314:340 (D28598) c-Maf long form [Gallus gallus] (Gallus gallus)
25. • gi|1060866|dbj|BAA05936.1|_314:340 (D28596) c-Maf long form [Gallus gallus] (Gallus gallus)
26. • gi|135919|sp|P23091|TMAF_AVIS4_314:340 TRANSFORMING PROTEIN MAF (Avian retrovirus AS42)
    • gi|68878|pir||TVFVAF transforming protein maf - avian retrovirus AS42 (Avian retrovirus AS42)
27. • gi|3335148|gb|AAC27037.1|_328:354 (AF055376) short form transcription factor C-MAF [Homo sapiens] (Homo sapiens)
28. • gi|5453736|ref|NP_005351.2|_328:354 v-maf musculoaponeurotic fibrosarcoma (avian) oncogene homolog (Homo sapiens)
    • gi|3335150|gb|AAC27038.1| (AF055377) long form transcription factor C-MAF [Homo sapiens] (Homo sapiens)
29. • gi|4588534|gb|AAD26141.1|AF109781_1_276:303 (AF109781) basic domain leucine zipper transcription factor [Danio rerio] (Danio rerio)
30. • gi|2493648|sp|Q42693|RUBB_CHLRE_325:377 RUBISCO SUBUNIT BINDING-PROTEIN BETA-1 SUBUNIT (60 KD CHAPERONIN BETA-1 SUBUNIT) (CPN-60 BETA-1) (Chlamydomonas reinhardtii)
    • gi|603911|gb|AAA98641.1| (L27471) chaperonin beta-like subunit [Chlamydomonas reinhardtii] (Chlamydomonas reinhardtii)
31. • gi|2129460|pir||S56644_325:377 chaperonin 60 beta-1 chain - Chlamydomonas reinhardtii (fragment) (Chlamydomonas reinhardtii)
32. • gi|7294937|gb|AAF50266.1|_159:196 (AE003552) CG3448 gene product [Drosophila melanogaster] (Drosophila melanogaster)

              10        20        30             40        50        60
              |         |         |              |         |         |
   1 VENPAEVIRELICYCLDTIAENQAKNEHLQKE.....NERLLRDWNDVQGRFEKCVSAKEALETD
   2 VENPAEVIRELICYCLDTIAENQAKNEHLQKE.....NERLLRDWNDVQGRFEKCVSAKEALETD
   3 VENPAEVIRELICYCLDTIAENQAKNEHLQKE.....NERLLRDWNDVQGRFEKCVSAKEALETD
   4 VENPAEVIRELICYCLDTIAENQAKNEHLQKE.....NERLLRDWNDVQGRFEKCVSAKEALETD
   5 VENPAEVIRELICYCLDTIAENQAKNEHLQKE.....NERLLRDWNDVQGRFEKCVSAKEALETD
   6 ISSKITFIFVLIYFSWNFYIQNGFTNKAIVKE.....ELRLLKEMDEAGSRLEKLLKVEKEHMER
   7 ---GAEIVRRALCYPLKLIAKNAGVNGSVVTEkvls.NDNFKFGYNAATGKYEDLMAA-------
   8 ---GAEIVRRALCYPLKLIAKNAGVNGSVVTEkvls.NDNFKFGYNAATGQYEDLMAA-------
   9 --------------------------EKMKSE.....AERCL-----AQG--EKLCDEKTEFENA
  10 ----AEIVKRALSYPLKLIAKNAGVNGSVVSEkvla.NDNVKFGYNAATGKYEDLMAA-------
  11 ---GAEIVRRALSYPLKLIAKNAGVNGSVVTEkvls.NDNFKFGYNAATGQYEDLMAA-------
  12 --------------------------EKMRSE.....AERCL-----AQG--EKLCDEKTEFESA
  13 ----ADIVKRALSYPLKLIAKNAGVNGSVVSEkvls.NDNVKFGYNAATGKYEDLMAA-------
  14 ----ADIVKRALSYPLKLIAKNAGVNGSVVSEkvls.NDNVKFGYNAATGKYEDLMAA-------
  15 ----AEIVKRALSYPLKLIAKNAGVNGSVVSEkvla.NDNVKFGYNAATGKYEDLMAA-------
  16 ----ADIVKRALSYPLKLIAKNAGVNGSVVSEkvls.NDNVKFGYNAATGKYEDLMAA-------
  17 ----ADIVKRALSYPLKLIAKNAGVNGSVVSEkvls.NDNVKFGYNAATGKYEDLMAA-------
  18 ------------------------VNEELQSE.....IDRAKRDFDAVIGQHELAVQSYQGYGKG
  19 --------------------------------.....----------LKKQLEELTQSKVEQETE
  20 --------------------------DHLKQE.....ISRLVRERDAYKEKYEKLVSS-------
  21 --------------------------DHLKQE.....ISRLVRERDAYKEKYEKLVSN-------
  22 --------------------------EHLKQE.....ISRLVRERDAYKEKYEKLVSN-------
  23 --------------------------EHLKQE.....ISRLVRERDAYKEKYEKLVSN-------
  24 --------------------------EHLKQE.....ISRLVRERDAYKEKYEKLVSN-------
  25 --------------------------EHLKQE.....ISRLVRERDAYKEKYEKLVSN-------
  26 --------------------------EHLKQE.....ISRLVRERDAYKEKYEKLVSN-------
  27 --------------------------DHLKQE.....ISRLVRERDAYKEKYEKLVSS-------
  28 --------------------------DHLKQE.....ISRLVRERDAYKEKYEKLVSS-------
  29 -------------------------HDHLKQE.....ISRLVRERDAYKEKYEKLVNS-------
  30 ---GADIIKRALCYPIKLIAQNAGVNGSVVMNevmknLDRPHYGYNAATDSFENLM---------
  31 ---GADIIKRALCYPIKLIAQNAGVNGSVVMNevmknLDRPHYGYNAATDSFENLM---------
  32 --------------------------------.....-------------EYEKYVRDSKLKEEE


              70        80        90     
              |         |         |     
   1 LYKRFILVLNEKKTKIRSLHNKLLNAAQEREKDIK
   2 LYKRFILVLNEKKTKIRSLHNKLLNAAQEREKDIK
   3 LYKRFILVLNEKKTKIRSLHNKLLNAAQEREKDIK
   4 LYKRFILVLNEKKTKIRSLHNKLLNAAQEREKDIK
   5 LYKRFILVLNEKKTKIRSLHNKLLNAAQEREKDIK
   6 L----------------------------------
   7 -----------------------------------
   8 -----------------------------------
   9 TYAKFLSVLNAKKAKLRAVRDK-------------
  10 -----------------------------------
  11 -----------------------------------
  12 TYAKFLSVLNAKKAKLRALRDK-------------
  13 -----------------------------------
  14 -----------------------------------
  15 -----------------------------------
  16 -----------------------------------
  17 -----------------------------------
  18 LIKKFRC----------------------------
  19 LLQKFRALLNEKKAKIRQQQQALSSRARPR-----
  20 -----------------------------------
  21 -----------------------------------
  22 -----------------------------------
  23 -----------------------------------
  24 -----------------------------------
  25 -----------------------------------
  26 -----------------------------------
  27 -----------------------------------
  28 -----------------------------------
  29 -----------------------------------
  30 -----------------------------------
  31 -----------------------------------
  32 LLKKFLLLLNSKKAHIRDLESQL------------