PFRMAT SS
TARGET T0120-116-210
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0120-116-210.remote-t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 5.05436
METHOD
MODEL 1
V C 0.762
E C 0.808
N C 0.895
P H 0.901
A H 0.950
E H 0.972
V H 0.976
I H 0.985
R H 0.981
E H 0.983
L H 0.972
I H 0.959
C H 0.956
Y H 0.923
C H 0.848
L H 0.853
D H 0.698
T H 0.671
I H 0.676
A H 0.722
E H 0.736
N H 0.627
Q H 0.658
A H 0.703
K H 0.752
N H 0.773
E H 0.780
H H 0.747
L H 0.773
Q H 0.853
K H 0.955
E H 0.969
N H 0.969
E H 0.975
R H 0.958
L H 0.950
L H 0.904
R H 0.814
D H 0.729
W H 0.698
N H 0.634
D H 0.498
V C 0.761
Q C 0.825
G C 0.751
R C 0.688
F C 0.482
E E 0.456
K E 0.498
C E 0.454
V E 0.384
S C 0.528
A H 0.685
K H 0.750
E H 0.871
A H 0.880
L H 0.917
E H 0.936
T H 0.958
D H 0.977
L H 0.987
Y H 0.993
K H 0.998
R H 0.999
F H 0.998
I H 0.998
L H 0.997
V H 0.997
L H 0.986
N H 0.933
E H 0.954
K H 0.923
K H 0.922
T H 0.901
K H 0.924
I H 0.957
R H 0.969
S H 0.963
L H 0.951
H H 0.926
N H 0.928
K H 0.906
L H 0.857
L H 0.845
N H 0.825
A H 0.847
A H 0.857
Q H 0.897
E H 0.855
R H 0.803
E H 0.716
K H 0.610
D C 0.571
I C 0.800
K C 0.958
END