PFRMAT SS TARGET T0120 AUTHOR 3670-4530-6947 METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 10 METHOD 7 10 METHOD 5 10 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment T0120.t2k.a2m.gz METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 2.01178 METHOD MODEL 1 M C 0.749 E C 0.581 R C 0.477 K E 0.433 I E 0.427 S E 0.473 R E 0.623 I E 0.679 H E 0.734 L E 0.639 V C 0.478 S C 0.695 E C 0.827 P C 0.826 S C 0.777 I C 0.567 T C 0.509 H E 0.408 F E 0.531 L E 0.605 Q E 0.568 V E 0.572 S E 0.459 W H 0.845 E H 0.893 K H 0.912 T H 0.877 L H 0.867 E H 0.773 S H 0.646 G C 0.859 F C 0.496 V E 0.872 I E 0.946 T E 0.943 L E 0.840 T C 0.597 D C 0.892 G C 0.905 H C 0.757 S C 0.583 A E 0.484 W E 0.511 T C 0.481 G C 0.586 T E 0.625 V E 0.679 S C 0.678 E H 0.576 S H 0.535 E H 0.572 I C 0.473 S C 0.527 Q H 0.596 E H 0.532 A H 0.664 D H 0.688 D H 0.856 M H 0.891 A H 0.892 M H 0.887 E H 0.876 K H 0.834 G C 0.781 K C 0.816 Y C 0.543 V H 0.737 G H 0.881 E H 0.924 L H 0.951 R H 0.956 K H 0.959 A H 0.938 L H 0.911 L H 0.814 S H 0.573 G C 0.883 A C 0.907 G C 0.947 P C 0.761 A C 0.762 D C 0.568 V E 0.686 Y E 0.832 T E 0.889 F E 0.851 N E 0.681 F C 0.489 S C 0.653 K H 0.499 E H 0.484 S H 0.503 C H 0.411 Y E 0.433 F H 0.471 F E 0.450 F E 0.434 E H 0.470 K C 0.567 N C 0.618 L H 0.496 K H 0.534 D H 0.527 V C 0.436 S C 0.405 F E 0.477 R E 0.504 L C 0.434 G C 0.752 S C 0.756 F C 0.703 N C 0.765 L H 0.701 E H 0.680 K H 0.743 V C 0.504 E C 0.586 N C 0.746 P H 0.958 A H 0.977 E H 0.988 V H 0.989 I H 0.993 R H 0.990 E H 0.992 L H 0.984 I H 0.974 C H 0.970 Y H 0.946 C H 0.882 L H 0.876 D H 0.670 T H 0.659 I H 0.695 A H 0.766 E H 0.789 N H 0.690 Q H 0.714 A H 0.764 K H 0.801 N H 0.814 E H 0.781 H H 0.706 L H 0.769 Q H 0.822 K H 0.888 E H 0.901 N H 0.850 E H 0.915 R H 0.858 L H 0.847 L H 0.744 R H 0.538 D C 0.527 W H 0.907 N H 0.865 D H 0.852 V H 0.547 Q H 0.596 G H 0.515 R H 0.503 F H 0.800 E H 0.781 K H 0.757 C H 0.695 V H 0.527 S C 0.514 A H 0.956 K H 0.953 E H 0.961 A H 0.932 L H 0.924 E H 0.887 T H 0.820 D H 0.820 L H 0.812 Y H 0.761 K H 0.661 R E 0.379 F E 0.714 I E 0.842 L E 0.913 V E 0.905 L E 0.810 N C 0.579 E C 0.762 K C 0.705 K C 0.493 T H 0.442 K H 0.563 I H 0.618 R H 0.763 S H 0.781 L H 0.796 H H 0.780 N H 0.922 K H 0.923 L H 0.915 L H 0.918 N H 0.915 A H 0.943 A H 0.941 Q H 0.947 E H 0.946 R H 0.932 E H 0.923 K H 0.902 D H 0.882 I H 0.843 K H 0.811 Q H 0.747 E H 0.667 G C 0.768 E C 0.609 T C 0.432 A H 0.421 I E 0.435 C H 0.381 S H 0.377 E C 0.441 M C 0.456 T C 0.510 A C 0.635 D C 0.776 R C 0.839 D C 0.917 P C 0.901 V C 0.747 Y C 0.643 D C 0.793 E C 0.743 S C 0.750 T C 0.734 D C 0.778 E C 0.602 E C 0.628 S C 0.751 E C 0.751 N C 0.796 Q H 0.518 T C 0.511 D C 0.512 L C 0.511 S C 0.578 G C 0.566 L C 0.552 A C 0.483 S C 0.365 A E 0.411 A E 0.537 V E 0.572 S C 0.550 K C 0.613 D C 0.756 D C 0.735 S C 0.636 I C 0.461 I C 0.491 S C 0.523 S C 0.641 L C 0.812 D C 0.895 V C 0.529 T C 0.583 D C 0.508 I C 0.671 A C 0.695 P C 0.562 S H 0.524 R H 0.742 K H 0.800 R H 0.849 R H 0.896 Q H 0.903 R H 0.897 M H 0.870 Q H 0.815 R H 0.698 N H 0.559 L C 0.532 G C 0.955 T C 0.884 E C 0.871 P C 0.796 K C 0.684 M C 0.650 A C 0.713 P C 0.581 Q H 0.518 E H 0.604 N H 0.554 Q H 0.601 L H 0.605 Q H 0.626 E H 0.603 K H 0.587 E H 0.518 N C 0.687 S C 0.796 R C 0.940 P C 0.915 D C 0.898 S C 0.777 S C 0.786 L C 0.849 P C 0.854 E C 0.716 T C 0.727 S C 0.741 K C 0.517 K C 0.490 E C 0.459 H C 0.526 I E 0.482 S C 0.668 A H 0.501 E C 0.485 N C 0.507 M C 0.667 S C 0.713 L H 0.898 E H 0.908 T H 0.891 L H 0.706 R H 0.512 N C 0.629 S C 0.842 S C 0.968 P H 0.873 E H 0.890 D H 0.913 L H 0.831 F H 0.790 D H 0.685 E H 0.559 I C 0.853 END