PFRMAT SS TARGET T0120 AUTHOR 3670-4530-6947 METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 10 METHOD 7 10 METHOD 5 10 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment T0120.remote-t2k.a2m.gz METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 18.8943 METHOD MODEL 1 M C 0.728 E C 0.596 R C 0.508 K C 0.432 I E 0.400 S E 0.460 R E 0.598 I E 0.659 H E 0.724 L E 0.634 V C 0.466 S C 0.685 E C 0.848 P C 0.817 S C 0.751 I C 0.552 T C 0.485 H E 0.483 F E 0.607 L E 0.665 Q E 0.649 V E 0.673 S E 0.538 W H 0.692 E H 0.664 K H 0.659 T H 0.588 L H 0.488 E C 0.524 S C 0.706 G C 0.783 F E 0.548 V E 0.911 I E 0.987 T E 0.987 L E 0.937 T E 0.630 D C 0.807 G C 0.863 H C 0.658 S E 0.517 A E 0.653 W E 0.632 T E 0.508 G C 0.621 T C 0.696 V C 0.626 S C 0.792 E H 0.700 S H 0.678 E H 0.667 I C 0.492 S C 0.576 Q H 0.560 E H 0.557 A C 0.490 D C 0.453 D H 0.536 M H 0.616 A H 0.524 M H 0.454 E H 0.403 K C 0.758 G C 0.722 K C 0.562 Y E 0.531 V E 0.572 G H 0.427 E H 0.543 L H 0.798 R H 0.827 K H 0.891 A H 0.867 L H 0.843 L H 0.752 S H 0.531 G C 0.876 A C 0.900 G C 0.948 P C 0.666 A C 0.697 D C 0.553 V E 0.541 Y E 0.704 T E 0.804 F E 0.819 N E 0.784 F E 0.707 S E 0.575 K E 0.486 E C 0.602 S C 0.674 C E 0.595 Y E 0.786 F E 0.856 F E 0.839 F E 0.780 E E 0.525 K C 0.729 N C 0.885 L C 0.749 K C 0.634 D C 0.456 V E 0.693 S E 0.884 F E 0.944 R E 0.961 L E 0.931 G E 0.735 S E 0.617 F E 0.593 N E 0.727 L E 0.731 E E 0.572 K C 0.518 V C 0.664 E C 0.791 N C 0.884 P H 0.537 A H 0.862 E H 0.905 V H 0.911 I H 0.932 R H 0.923 E H 0.924 L H 0.840 I H 0.737 C H 0.649 Y H 0.467 C C 0.485 L C 0.601 D C 0.696 T E 0.429 I E 0.627 A E 0.597 E C 0.423 N C 0.490 Q C 0.505 A C 0.641 K C 0.625 N H 0.516 E H 0.621 H H 0.689 L H 0.702 Q H 0.698 K H 0.900 E H 0.926 N H 0.954 E H 0.972 R H 0.955 L H 0.956 L H 0.926 R H 0.904 D H 0.926 W H 0.951 N H 0.965 D H 0.974 V H 0.980 Q H 0.982 G H 0.988 R H 0.982 F H 0.962 E H 0.976 K H 0.970 C H 0.945 V H 0.959 S H 0.971 A H 0.983 K H 0.987 E H 0.986 A H 0.986 L H 0.980 E H 0.973 T H 0.970 D H 0.944 L H 0.867 Y H 0.903 K H 0.934 R H 0.929 F H 0.935 I H 0.929 L H 0.921 V H 0.895 L H 0.813 N H 0.797 E H 0.758 K H 0.744 K H 0.733 T H 0.625 K C 0.587 I H 0.637 R H 0.614 S H 0.620 L H 0.610 H H 0.668 N H 0.669 K H 0.805 L H 0.823 L H 0.890 N H 0.873 A H 0.888 A H 0.858 Q H 0.776 E H 0.729 R H 0.604 E C 0.513 K C 0.579 D C 0.488 I C 0.480 K C 0.473 Q C 0.534 E C 0.529 G C 0.756 E C 0.603 T H 0.489 A H 0.459 I E 0.373 C H 0.454 S H 0.458 E C 0.460 M C 0.507 T C 0.556 A C 0.657 D C 0.788 R C 0.828 D C 0.903 P C 0.882 V C 0.723 Y C 0.632 D C 0.762 E C 0.758 S C 0.767 T C 0.758 D C 0.785 E C 0.633 E C 0.639 S C 0.710 E C 0.706 N C 0.759 Q C 0.530 T C 0.575 D C 0.582 L C 0.549 S C 0.589 G C 0.547 L C 0.524 A C 0.469 S C 0.395 A C 0.359 A E 0.382 V E 0.419 S C 0.602 K C 0.649 D C 0.779 D C 0.719 S C 0.639 I C 0.465 I C 0.500 S C 0.544 S C 0.644 L C 0.765 D C 0.835 V C 0.517 T C 0.572 D C 0.515 I C 0.678 A C 0.725 P C 0.611 S C 0.549 R H 0.610 K H 0.646 R H 0.702 R H 0.756 Q H 0.754 R H 0.689 M H 0.536 Q C 0.412 R C 0.651 N C 0.773 L C 0.701 G C 0.686 T C 0.678 E C 0.720 P C 0.746 K C 0.781 M C 0.833 A C 0.836 P C 0.767 Q C 0.724 E C 0.567 N C 0.476 Q C 0.413 L C 0.490 Q C 0.567 E C 0.508 K C 0.445 E C 0.451 N C 0.496 S C 0.596 R C 0.747 P C 0.647 D C 0.619 S C 0.617 S C 0.804 L C 0.850 P C 0.907 E C 0.854 T C 0.760 S C 0.662 K C 0.619 K C 0.571 E C 0.590 H C 0.678 I C 0.617 S C 0.803 A H 0.595 E H 0.540 N H 0.533 M C 0.698 S C 0.713 L H 0.869 E H 0.872 T H 0.854 L H 0.673 R C 0.487 N C 0.657 S C 0.834 S C 0.960 P H 0.834 E H 0.861 D H 0.893 L H 0.808 F H 0.764 D H 0.652 E H 0.523 I C 0.863 END