PFRMAT SS
TARGET T0120
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignments:
METHOD		T0120-1-115.remoter-t2k.a2m.gz
METHOD		T0120-116-210.remoter-t2k.a2m.gz
METHOD		T0120-211-end.remote-t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD
METHOD Total sequence weight for alignment 1-115 was 13.563
METHOD Total sequence weight for alignment 116-210 was 13.0256
METHOD Total sequence weight for alignment 211-end was 6.23127
METHOD
MODEL 1
M C 0.658
E C 0.768
R C 0.822
K E 0.609
I E 0.804
S E 0.825
R E 0.951
I E 0.990
H E 0.994
L E 0.989
V E 0.913
S E 0.636
E C 0.715
P C 0.849
S C 0.868
I H 0.682
T H 0.741
H H 0.852
F H 0.817
L H 0.830
Q H 0.871
V H 0.854
S H 0.802
W H 0.933
E H 0.936
K H 0.885
T H 0.729
L C 0.645
E C 0.750
S C 0.821
G C 0.730
F E 0.536
V E 0.962
I E 0.988
T E 0.983
L E 0.924
T C 0.581
D C 0.923
G C 0.859
H C 0.658
S C 0.634
A C 0.568
W C 0.586
T C 0.625
G C 0.847
T C 0.883
V H 0.640
S H 0.686
E H 0.729
S C 0.639
E C 0.613
I C 0.629
S C 0.768
Q H 0.618
E H 0.522
A H 0.896
D H 0.886
D H 0.912
M H 0.893
A H 0.849
M H 0.794
E H 0.760
K H 0.667
G C 0.471
K C 0.637
Y C 0.558
V H 0.385
G H 0.463
E H 0.509
L H 0.609
R H 0.550
K H 0.594
A H 0.522
L H 0.430
L C 0.383
S C 0.600
G C 0.945
A C 0.905
G C 0.943
P C 0.958
A C 0.937
D C 0.813
V E 0.738
Y E 0.941
T E 0.968
F E 0.943
N E 0.792
F E 0.510
S C 0.509
K C 0.404
E H 0.580
S H 0.785
C H 0.850
Y H 0.912
F H 0.923
F H 0.902
F H 0.816
E H 0.763
K H 0.553
N C 0.613
L C 0.526
K C 0.503
D C 0.474
V C 0.478
S E 0.470
F E 0.586
R E 0.600
L E 0.486
G C 0.661
S C 0.626
F C 0.510
N C 0.549
L C 0.591
E C 0.813
K C 0.955
V C 0.486
E C 0.623
N C 0.601
P C 0.495
A H 0.624
E H 0.653
V H 0.683
I H 0.743
R H 0.790
E H 0.833
L H 0.845
I H 0.769
C H 0.556
Y C 0.522
C C 0.745
L H 0.580
D H 0.704
T H 0.730
I H 0.610
A H 0.598
E H 0.686
N H 0.651
Q H 0.495
A C 0.779
K C 0.689
N C 0.728
E H 0.653
H H 0.790
L H 0.895
Q H 0.915
K H 0.938
E H 0.936
N H 0.929
E H 0.923
R H 0.897
L H 0.847
L H 0.859
R H 0.779
D H 0.659
W H 0.869
N H 0.899
D H 0.921
V H 0.908
Q H 0.912
G H 0.948
R H 0.959
F H 0.980
E H 0.989
K H 0.988
C H 0.979
V H 0.962
S H 0.933
A H 0.929
K H 0.893
E H 0.909
A H 0.902
L H 0.908
E H 0.905
T H 0.941
D H 0.973
L H 0.982
Y H 0.992
K H 0.997
R H 0.997
F H 0.995
I H 0.992
L H 0.992
V H 0.990
L H 0.964
N H 0.872
E H 0.926
K H 0.897
K H 0.909
T H 0.899
K H 0.921
I H 0.947
R H 0.966
S H 0.958
L H 0.946
H H 0.928
N H 0.923
K H 0.901
L H 0.842
L H 0.818
N H 0.815
A H 0.806
A H 0.729
Q H 0.761
E H 0.720
R H 0.699
E H 0.630
K H 0.545
D C 0.601
I C 0.800
K C 0.958
Q C 0.642
E C 0.672
G H 0.893
E H 0.927
T H 0.953
A H 0.930
I H 0.911
C H 0.887
S H 0.866
E H 0.813
M H 0.654
T C 0.478
A C 0.737
D C 0.887
R C 0.846
D C 0.816
P C 0.704
V C 0.507
Y E 0.483
D C 0.534
E C 0.662
S C 0.777
T C 0.834
D C 0.849
E C 0.745
E C 0.723
S C 0.737
E C 0.715
N C 0.735
Q C 0.636
T C 0.685
D C 0.674
L H 0.669
S H 0.587
G H 0.569
L H 0.466
A H 0.442
S H 0.440
A H 0.486
A H 0.440
V E 0.410
S C 0.643
K H 0.491
D H 0.648
D H 0.705
S H 0.629
I H 0.617
I H 0.615
S H 0.622
S H 0.430
L C 0.609
D C 0.879
V C 0.645
T C 0.727
D C 0.731
I C 0.731
A C 0.721
P H 0.573
S H 0.774
R H 0.764
K H 0.743
R H 0.687
R H 0.544
Q C 0.867
R C 0.522
M H 0.399
Q H 0.392
R C 0.456
N C 0.515
L C 0.606
G C 0.936
T C 0.720
E C 0.616
P C 0.594
K C 0.525
M C 0.604
A C 0.755
P H 0.577
Q H 0.622
E H 0.651
N C 0.506
Q H 0.553
L H 0.558
Q H 0.548
E C 0.492
K C 0.512
E C 0.715
N C 0.681
S C 0.730
R C 0.896
P C 0.897
D C 0.929
S C 0.807
S C 0.770
L C 0.833
P C 0.829
E C 0.789
T C 0.802
S C 0.817
K C 0.601
K C 0.545
E C 0.526
H C 0.491
I E 0.577
S E 0.564
A E 0.565
E E 0.631
N E 0.700
M E 0.791
S E 0.825
L E 0.808
E E 0.792
T E 0.764
L E 0.602
R C 0.509
N C 0.597
S C 0.717
S C 0.900
P H 0.675
E H 0.657
D H 0.677
L C 0.573
F C 0.671
D C 0.782
E C 0.837
I C 0.922
END