PFRMAT SS
TARGET T0119
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0119.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 375.701
METHOD
MODEL 1
M E 0.551
S C 0.511
N C 0.651
H C 0.695
Q E 0.642
V E 0.852
A E 0.950
L E 0.978
Q E 0.982
F E 0.960
E E 0.837
D C 0.622
G C 0.913
V C 0.907
T C 0.631
R E 0.815
F E 0.951
I E 0.981
C E 0.961
I E 0.823
A C 0.755
Q C 0.935
G C 0.831
E C 0.521
T H 0.440
L H 0.958
S H 0.970
D H 0.984
A H 0.974
A H 0.979
Y H 0.974
R H 0.957
Q H 0.874
Q C 0.954
I C 0.972
N C 0.910
I C 0.621
P C 0.650
M C 0.568
D C 0.519
C C 0.589
R C 0.702
E C 0.700
G C 0.786
E C 0.618
C C 0.556
G E 0.499
T E 0.570
C E 0.595
R E 0.755
A E 0.892
F E 0.935
C E 0.902
E E 0.749
S E 0.511
G C 0.633
N C 0.528
Y C 0.478
D C 0.603
M C 0.713
P C 0.812
E C 0.778
D C 0.616
N C 0.480
Y C 0.471
I H 0.504
E C 0.499
D C 0.589
A C 0.684
L C 0.831
T C 0.946
P H 0.934
E H 0.926
E H 0.947
A H 0.895
Q H 0.857
Q H 0.651
G C 0.989
Y C 0.815
V E 0.742
L E 0.940
A E 0.970
C E 0.942
Q E 0.906
C E 0.829
R E 0.755
P E 0.634
T C 0.637
S C 0.827
D C 0.825
A E 0.617
V E 0.895
F E 0.957
Q E 0.940
I E 0.797
Q C 0.538
A C 0.765
S C 0.781
S C 0.553
E C 0.474
V H 0.504
C C 0.462
K C 0.596
T C 0.730
K C 0.734
I C 0.704
H C 0.673
H C 0.564
F E 0.528
E E 0.692
G E 0.897
T E 0.966
L E 0.979
A E 0.963
R E 0.886
V E 0.776
E E 0.732
N E 0.678
L C 0.568
S C 0.814
D C 0.893
S C 0.735
T E 0.799
I E 0.910
T E 0.988
F E 0.995
D E 0.990
I E 0.958
Q E 0.636
L C 0.704
D C 0.927
D C 0.953
G C 0.858
Q C 0.769
P C 0.649
D C 0.622
I C 0.692
H C 0.830
F C 0.722
L C 0.811
A C 0.778
G C 0.725
Q E 0.569
Y E 0.887
V E 0.959
N E 0.970
V E 0.961
T E 0.858
L E 0.543
P C 0.858
G C 0.940
T C 0.834
T C 0.688
E C 0.503
T E 0.501
R C 0.525
S E 0.544
Y E 0.703
S E 0.718
F E 0.493
S C 0.648
S C 0.649
Q C 0.752
P C 0.857
G C 0.916
N C 0.935
R C 0.891
L E 0.665
T E 0.949
G E 0.990
F E 0.997
V E 0.998
V E 0.996
R E 0.987
N E 0.932
V C 0.518
P C 0.878
Q C 0.919
G C 0.900
K C 0.648
M H 0.793
S H 0.869
E H 0.952
Y H 0.936
L H 0.936
S H 0.891
V H 0.786
Q H 0.629
A C 0.652
K C 0.859
A C 0.854
G C 0.947
D C 0.683
K E 0.663
M E 0.871
S E 0.901
F E 0.862
T E 0.734
G C 0.529
P C 0.743
F C 0.807
G C 0.806
S C 0.739
F C 0.564
Y E 0.473
L C 0.563
R C 0.750
D C 0.884
V C 0.924
K C 0.938
R C 0.841
P C 0.617
V E 0.916
L E 0.985
M E 0.993
L E 0.973
A E 0.780
G C 0.681
G C 0.848
T C 0.705
G C 0.491
I H 0.699
A H 0.894
P H 0.965
F H 0.987
L H 0.996
S H 0.997
M H 0.997
L H 0.993
Q H 0.990
V H 0.969
L H 0.905
E H 0.827
Q H 0.511
K C 0.851
G C 0.926
S C 0.899
E C 0.869
H C 0.791
P E 0.534
V E 0.902
R E 0.975
L E 0.991
V E 0.989
F E 0.959
G E 0.803
V C 0.513
T C 0.744
Q C 0.903
D H 0.671
C H 0.721
D H 0.814
L H 0.814
V H 0.771
A H 0.787
L H 0.975
E H 0.980
Q H 0.983
L H 0.972
D H 0.971
A H 0.956
L H 0.938
Q H 0.919
Q H 0.887
K H 0.793
L C 0.950
P C 0.929
W C 0.835
F E 0.612
E E 0.905
Y E 0.978
R E 0.984
T E 0.984
V E 0.976
V E 0.923
A E 0.668
H C 0.722
A C 0.903
E C 0.923
S C 0.940
Q C 0.874
H C 0.884
E C 0.885
R C 0.810
K C 0.667
G E 0.487
Y E 0.560
V H 0.618
T H 0.777
G H 0.930
H H 0.938
I H 0.945
E H 0.934
Y H 0.887
D H 0.812
W H 0.665
L C 0.598
N C 0.893
G C 0.924
G C 0.933
E C 0.895
V C 0.618
D E 0.814
V E 0.976
Y E 0.986
L E 0.965
C E 0.765
G C 0.727
P C 0.919
V C 0.506
P H 0.733
M H 0.915
V H 0.946
E H 0.973
A H 0.982
V H 0.987
R H 0.989
S H 0.989
W H 0.982
L H 0.976
D H 0.970
T H 0.958
Q H 0.893
G C 0.955
I C 0.940
Q C 0.938
P C 0.606
A C 0.555
N C 0.428
F E 0.572
L E 0.743
F E 0.762
E E 0.601
K E 0.576
F C 0.555
S C 0.828
A C 0.918
N C 0.962
END