; SAM: prettyalign v3.3.0 (December 20, 2000) compiled 01/18/01_08:17:01 ; (c) 1992-2000 Regents of the University of California, Santa Cruz ; ; Sequence Alignment and Modeling Software System ; http://www.cse.ucsc.edu/research/compbio/sam.html ; ; ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- ; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: ; Extension and analysis of the basic method, CABIOS 12:95-107, 1996. ; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting ; remote protein homologies, Bioinformatics 14(10):846-856, 1998. ; A. Krogh et al., Hidden Markov models in computational biology: ; Applications to protein modeling, JMB 235:1501-1531, Feb 1994. ; --------------------------------------------------------------------- ; Sequences correspond to the following labels: ; 1 gi|9625408|ref|NP_039638.1|_1:149 ; 2 gi|9634009|ref|NP_052083.1|_3:150 ; 3 T0118 ; 4 gi|9627444|ref|NP_041972.1|_1:149 ; 5 gi|9964626|ref|NP_064756.1|_15:133 ; 6 T0118-active-sites1 ; 7 T0118-active-sites0 ; 8 T0118-active-sites3 ; 9 T0118-active-sites2 ; 10 T0118-active-sites5 ; 11 T0118-active-sites4 ; 12 T0118-active-sites7 ; 13 T0118-active-sites6 ; 14 T0118-active-sites9 ; 15 T0118-active-sites8 10 20 30 40 50 60 | | | | | | 1 MAGAYAARCTQGRAFRSGLEDKVSKQLESKGIKFDYELWRIPYVIPESDHLYTPDFLLPNGIFIE 2 -GAYAARGVRKVGAFRSGLEDKVSKQLESKGIKFDYELWRIPYVIPASDHLYTPDFLLPNGIFIE 3 MAGYGAKGIRKVGAFRSGLEDKVSKQLESKGIKFEYEEWKVPYVIPASNHTYTPDFLLPNGIFVE 4 MAGYGAKGIRKVGAFRSGLEDKVSKQLESKGIKFEYEEWKVPYVIPASNHTYTPDFLLPNGIFVE 5 ------------AGYRSGLEEQTAKDLKKRKVLFTYEETKIKWL-DSKVRTYTPDFVLPNGVIIE 6 XXXXXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXDXXXXXXXXXE 7 XXXXXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXDXXXXXXXXXE 8 XXXXXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXDXXXXXXXXXE 9 XXXXXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXDXXXXXXXXXE 10 XXXXXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXDXXXXXXXXXE 11 XXXXXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXDXXXXXXXXXE 12 XXXXXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXDXXXXXXXXXE 13 XXXXXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXDXXXXXXXXXE 14 XXXXXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXDXXXXXXXXXE 15 XXXXXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXDXXXXXXXXXE 70 80 90 100 110 120 13 | | | | | | 1 TKGLWDSDDRKKHLLIREQHPEL.DIRLVFSSSRSKLYKGSPTSYGEWCEKHGILFADKLIPVAG 2 TKGLWDSDDRKKHLLIREQHPEL.DIRLVFSSSRSKLYKGSPTSYAEWCEKHGILFADKLIPVEW 3 TKGLWESDDRKKHLLIREQHPEL.DIRIVFSSSRTKLYKGSPTSYGEFCEKHGIKFADKLIPAEW 4 TKGLWESDDRKKHLLIREQHPEL.DIRIVFSSSRTKLYKGSPTSYGEFCEKHGIKFADKLIPAEW 5 TKGRFVAADRRKHLEIQKQFGTLyDIRFVFTNSKAKLYKGAKSSYADWCNKHGFLYADKTIPEDW 6 XXXXXXXXDXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 7 XXXXXXXXDXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 8 XXXXXXXXDXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 9 XXXXXXXXDXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 10 XXXXXXXXDXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 11 XXXXXXXXDXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 12 XXXXXXXXDXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 13 XXXXXXXXDXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 14 XXXXXXXXDXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 15 XXXXXXXXDXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 0 140 | | 1 VKEPKKEVPFDKFKTKKGVK 2 LKEPKKEVPFDKFKTKKGVK 3 IKEPKKEVPFDRLKRKGGKK 4 IKEPKKEVPFDRLKRKGGKK 5 LN------------------ 6 XXXXXXXXXXXRLKRKGGKK 7 XXXXXXXXXXXRLKRKGGKK 8 XXXXXXXXXXXRLKRKGGKK 9 XXXXXXXXXXXRLKRKGGKK 10 XXXXXXXXXXXRLKRKGGKK 11 XXXXXXXXXXXRLKRKGGKK 12 XXXXXXXXXXXRLKRKGGKK 13 XXXXXXXXXXXRLKRKGGKK 14 XXXXXXXXXXXRLKRKGGKK 15 XXXXXXXXXXXRLKRKGGKK