PFRMAT SS
TARGET T0118
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0118-act.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 3.48394
METHOD
MODEL 1
M C 0.633
A C 0.525
G H 0.462
Y H 0.530
G H 0.542
A H 0.567
K H 0.568
G H 0.552
I H 0.549
R H 0.522
K H 0.510
V H 0.541
G H 0.569
A H 0.528
F H 0.512
R H 0.452
S C 0.477
G C 0.489
L H 0.632
E H 0.667
D H 0.700
K H 0.691
V H 0.681
S H 0.672
K H 0.640
Q H 0.584
L H 0.556
E H 0.488
S C 0.480
K C 0.540
G C 0.588
I C 0.443
K E 0.441
F E 0.474
E E 0.429
Y E 0.396
E E 0.414
E E 0.456
W E 0.441
K E 0.424
V C 0.456
P C 0.476
Y C 0.421
V E 0.422
I C 0.485
P C 0.607
A C 0.632
S C 0.630
N C 0.548
H C 0.504
T C 0.447
Y C 0.490
T C 0.601
P C 0.661
D C 0.670
F C 0.505
L E 0.456
L C 0.537
P C 0.741
N C 0.764
G C 0.596
I E 0.537
F E 0.690
V E 0.705
E E 0.584
T E 0.502
K C 0.456
G C 0.597
L C 0.524
W C 0.544
E C 0.586
S C 0.593
D C 0.635
D C 0.673
R H 0.542
K H 0.589
K H 0.627
H H 0.612
L H 0.617
L H 0.593
I H 0.570
R H 0.510
E H 0.443
Q C 0.453
H C 0.599
P C 0.666
E C 0.631
L C 0.606
D C 0.561
I C 0.417
R E 0.500
I E 0.620
V E 0.610
F E 0.537
S C 0.426
S C 0.523
S C 0.494
R H 0.438
T H 0.496
K H 0.499
L H 0.472
Y H 0.442
K C 0.477
G C 0.615
S C 0.678
P C 0.623
T C 0.563
S C 0.521
Y H 0.493
G H 0.554
E H 0.592
F H 0.570
C H 0.565
E H 0.509
K H 0.510
H H 0.449
G C 0.479
I C 0.390
K E 0.345
F C 0.361
A C 0.449
D C 0.508
K C 0.511
L C 0.513
I C 0.534
P C 0.534
A H 0.548
E H 0.581
W H 0.584
I H 0.517
K H 0.458
E C 0.511
P C 0.534
K C 0.538
K C 0.541
E C 0.536
V C 0.559
P C 0.540
F H 0.768
D H 0.794
R H 0.804
L H 0.750
K H 0.696
R H 0.660
K H 0.594
G C 0.815
G C 0.935
K C 0.883
K C 0.946
END