;  SAM: prettyalign v3.2 (July 31, 2000) compiled 08/11/00_16:27:51
;  (c) 1992-2000 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
; Sequences correspond to the following labels:
; 1 T0118
; 2 T0118-active-sites
; 3 gi|9627444|ref|NP_041972.1|_1:149
; 4 gi|9634009|ref|NP_052083.1|_3:150
; 5 gi|9625408|ref|NP_039638.1|_1:149
; 6 gi|9964626|ref|NP_064756.1|_15:133
              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MAGYGAKGIRKVGAFRSGLEDKVSKQLESKGIKFEYEEWKVPYVIPASNHTYTPDFLLPNGIFVE
   2 XXXXXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXDXXXXXXXXXE
   3 MAGYGAKGIRKVGAFRSGLEDKVSKQLESKGIKFEYEEWKVPYVIPASNHTYTPDFLLPNGIFVE
   4 -GAYAARGVRKVGAFRSGLEDKVSKQLESKGIKFDYELWRIPYVIPASDHLYTPDFLLPNGIFIE
   5 MAGAYAARCTQGRAFRSGLEDKVSKQLESKGIKFDYELWRIPYVIPESDHLYTPDFLLPNGIFIE
   6 ------------AGYRSGLEEQTAKDLKKRKVLFTYEETKIKWL-DSKVRTYTPDFVLPNGVIIE


         70        80         90       100       110       120       13
         |         |          |         |         |         |         
   1 TKGLWESDDRKKHLLIREQHPEL.DIRIVFSSSRTKLYKGSPTSYGEFCEKHGIKFADKLIPAEW
   2 XXXXXXXXDXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
   3 TKGLWESDDRKKHLLIREQHPEL.DIRIVFSSSRTKLYKGSPTSYGEFCEKHGIKFADKLIPAEW
   4 TKGLWDSDDRKKHLLIREQHPEL.DIRLVFSSSRSKLYKGSPTSYAEWCEKHGILFADKLIPVEW
   5 TKGLWDSDDRKKHLLIREQHPEL.DIRLVFSSSRSKLYKGSPTSYGEWCEKHGILFADKLIPVAG
   6 TKGRFVAADRRKHLEIQKQFGTLyDIRFVFTNSKAKLYKGAKSSYADWCNKHGFLYADKTIPEDW


      0       140         
     |         |         
   1 IKEPKKEVPFDRLKRKGGKK
   2 XXXXXXXXXXXRLKRKGGKK
   3 IKEPKKEVPFDRLKRKGGKK
   4 LKEPKKEVPFDKFKTKKGVK
   5 VKEPKKEVPFDKFKTKKGVK
   6 LN------------------