PFRMAT SS
TARGET T0118
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0118-act.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 3.1563
METHOD
MODEL 1
M C 0.650
A C 0.551
G C 0.467
Y H 0.530
G H 0.536
A H 0.564
K H 0.568
G H 0.548
I H 0.555
R H 0.520
K H 0.510
V H 0.534
G H 0.572
A H 0.538
F H 0.524
R C 0.476
S C 0.510
G C 0.503
L H 0.646
E H 0.687
D H 0.716
K H 0.700
V H 0.698
S H 0.667
K H 0.627
Q H 0.570
L H 0.557
E H 0.497
S C 0.508
K C 0.581
G C 0.659
I C 0.498
K E 0.424
F E 0.470
E C 0.442
Y C 0.421
E C 0.408
E E 0.403
W C 0.430
K C 0.468
V C 0.530
P C 0.561
Y C 0.468
V C 0.450
I C 0.521
P C 0.686
A C 0.712
S C 0.715
N C 0.622
H C 0.579
T C 0.475
Y C 0.527
T C 0.713
P C 0.772
D C 0.783
F C 0.552
L E 0.478
L C 0.612
P C 0.831
N C 0.836
G C 0.636
I E 0.571
F E 0.733
V E 0.747
E E 0.591
T E 0.472
K C 0.540
G C 0.691
L C 0.604
W C 0.626
E C 0.669
S C 0.622
D C 0.637
D C 0.655
R H 0.540
K H 0.590
K H 0.623
H H 0.613
L H 0.614
L H 0.603
I H 0.564
R H 0.513
E H 0.443
Q C 0.501
H C 0.682
P C 0.745
E C 0.702
L C 0.661
D C 0.614
I C 0.458
R E 0.530
I E 0.679
V E 0.664
F E 0.576
S C 0.507
S C 0.615
S C 0.585
R C 0.454
T H 0.493
K H 0.502
L H 0.461
Y H 0.422
K C 0.518
G C 0.678
S C 0.755
P C 0.707
T C 0.651
S C 0.614
Y H 0.533
G H 0.611
E H 0.660
F H 0.630
C H 0.619
E H 0.540
K H 0.529
H C 0.477
G C 0.567
I C 0.439
K E 0.396
F C 0.386
A C 0.499
D C 0.587
K C 0.611
L C 0.629
I C 0.699
P C 0.726
A H 0.561
E H 0.610
W H 0.602
I H 0.496
K C 0.504
E C 0.600
P C 0.628
K C 0.626
K C 0.628
E C 0.646
V C 0.693
P C 0.712
F H 0.758
D H 0.791
R H 0.791
L H 0.702
K H 0.628
R H 0.575
K H 0.514
G C 0.766
G C 0.920
K C 0.882
K C 0.945
END