;  SAM: prettyalign v3.3.0 (January 24, 2000) compiled 02/10/01_22:08:06
;  (c) 1992-2000 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
; Sequences correspond to the following labels:
; 1 T0118
; 2 T0118-active-sites
; 3 2pviA
; 4 2pviA
              10                20         30        40         50     
              |                 |          |         |          |     
   1 MAGYGAKGIR........KVGAFRSGLEDKVSKQLES.KGIKFEYEEWKVPYVIPASN.HTYTP.
   2 XXXXXXXXXX........XXXXXXXXXEXXXXXXXXX.XXXXXEXXXXXXXXXXXXXX.XXXXX.
   3 MSHPDLNKLL........ELWPHIQEYQDLALKHGIN.--DIFQDNGGKLLQVLLITG.LTVLPg
   4 SHPDLNKLLElwphiqeyQDLALKHGINDIFQDNGGKlLQVLLITGLTVLPGRAGNDAvDNAGQ.


              60               70        80        90       100       1
              |                |         |         |         |        
   1 ....DFLLPNG.......IFVETKGLWESDDRKKHLLIREQHPELDIRIVFSSSRTKLYKGSPTS
   2 ....DXXXXXX.......XXXEXXXXXXXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
   3 ragnDAVDNAGqeyelksINIDLTKGFSTHHHMNPVIIAKARQV---PWIF-----AIYRGIAIE
   4 ....EYEL-KS.......INIDLTKGFSTHHHMNPVIIAKARQVP---WIF-----AIYRGIAIE


      10       120       130       140              150
      |         |         |         |                |
   1 YGEFCEKHGIKFADKLIPAEWIKEPKKEVPFDRLKRKGGKK........
   2 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLKRKGGKK........
   3 AIYRLEPKDLEFYYDKWERKWYSDGHKDINNPKIPVKYVM-ehgtkiy.
   4 AIYRLEPKDLEFYYDKWERKWYSDGHKDINNPKIPVKYVM-ehgtkiy.