;  SAM: prettyalign v3.3.0 (January 24, 2000) compiled 02/10/01_22:08:06
;  (c) 1992-2000 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
; Sequences correspond to the following labels:
; 1 T0118
; 2 2pviA
; 3 2pviA
              10        20                        30        40        5
              |         |                         |         |         
   1 MAGYGAKGIRKVGAFRSGLE........DKVSKQ........LESKGIKFEYEEWKVPYVIPASN
   2 MSHPDLNKLLELWPHIQEYQ........DLALKHgin16lqvLLITGLTVLPGRAGNDAVDNAGQ
   3 SHPDLNKLLELWPHIQEYQDlal15dngGKLLQV........LLITGLTVLPGRAGNDAVDNAGQ


      0        60        70        80           90       100       110 
     |         |         |         |            |         |         | 
   1 HTYTPDFLLPNGIFVETKGLWESDDRKKHLLIREQHPEL...DIRIVFSSSRTKLYKGSPTSYGE
   2 EYELKSINIDLTKGFSTHHHMNPVIIAKARQVPWIFAIYrgiAIEAIYRLEPKDLEFYYDKWERK
   3 EYELKSINIDLTKGFSTHHHMNPVIIAKARQVPWIFAIYrgiAIEAIYRLEPKDLEFYYDKWERK


            120       130       140         
             |         |         |         
   1 FCEKHGIKFADKLIPAEWIKEPKKEVPFDRLKRKGGKK
   2 WYSDGHKDINNPKIPVKYVMEHGTKIY-----------
   3 WYSDGHKDINNPKIPVKYVMEHGTKIY-----------