PFRMAT SS
TARGET T0118
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0118.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 2.1277
METHOD
MODEL 1
M C 0.688
A C 0.746
G C 0.731
Y C 0.595
G C 0.528
A C 0.452
K C 0.473
G C 0.487
I C 0.455
R C 0.367
K H 0.417
V H 0.469
G H 0.475
A H 0.433
F H 0.492
R H 0.504
S H 0.523
G C 0.564
L H 0.576
E H 0.640
D H 0.773
K H 0.811
V H 0.879
S H 0.881
K H 0.885
Q H 0.866
L H 0.873
E H 0.834
S H 0.752
K H 0.521
G C 0.918
I C 0.580
K E 0.745
F E 0.819
E E 0.734
Y E 0.565
E E 0.475
E E 0.534
W C 0.479
K C 0.532
V C 0.635
P C 0.652
Y E 0.815
V E 0.892
I E 0.838
P E 0.510
A C 0.838
S C 0.867
N C 0.856
H C 0.758
T C 0.484
Y C 0.500
T C 0.751
P C 0.835
D C 0.807
F E 0.631
L E 0.770
L E 0.543
P C 0.873
N C 0.920
G C 0.505
I E 0.854
F E 0.942
V E 0.934
E E 0.815
T E 0.604
K C 0.639
G C 0.720
L C 0.633
W C 0.753
E C 0.608
S C 0.600
D C 0.517
D C 0.569
R H 0.650
K H 0.604
K H 0.624
H H 0.461
L E 0.387
L H 0.445
I E 0.417
R H 0.365
E C 0.488
Q C 0.672
H C 0.952
P C 0.834
E C 0.653
L C 0.613
D C 0.551
I E 0.726
R E 0.874
I E 0.958
V E 0.962
F E 0.925
S E 0.640
S C 0.696
S C 0.873
R H 0.639
T H 0.726
K H 0.740
L H 0.591
Y H 0.430
K C 0.568
G C 0.795
S C 0.917
P C 0.857
T C 0.764
S C 0.659
Y C 0.485
G H 0.463
E H 0.575
F H 0.639
C H 0.776
E H 0.726
K H 0.757
H H 0.729
G C 0.500
I H 0.480
K H 0.400
F H 0.581
A H 0.616
D H 0.638
K H 0.525
L C 0.417
I C 0.519
P C 0.548
A H 0.576
E H 0.598
W H 0.566
I C 0.446
K C 0.534
E C 0.685
P C 0.697
K C 0.700
K C 0.602
E C 0.648
V C 0.776
P C 0.830
F H 0.572
D H 0.665
R H 0.696
L H 0.627
K H 0.574
R H 0.515
K C 0.472
G C 0.767
G C 0.922
K C 0.882
K C 0.945
END