PFRMAT SS
TARGET T0117
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0117.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 51.6156
METHOD
MODEL 1
M C 0.823
A C 0.815
E C 0.799
A C 0.643
A C 0.495
S C 0.397
C C 0.436
A C 0.505
R C 0.621
K C 0.813
G C 0.860
T C 0.860
K C 0.847
Y C 0.789
A C 0.720
E C 0.694
G C 0.746
T C 0.806
Q C 0.859
P C 0.694
F E 0.650
T E 0.950
V E 0.992
L E 0.989
I E 0.954
E E 0.721
G C 0.691
N C 0.750
I C 0.680
G C 0.584
S C 0.485
G H 0.528
K H 0.755
T H 0.916
T H 0.967
Y H 0.986
L H 0.990
N H 0.992
H H 0.987
F H 0.980
E H 0.968
K H 0.927
Y H 0.796
K C 0.839
N C 0.879
D C 0.934
I C 0.521
C E 0.806
L E 0.855
L E 0.771
T E 0.608
E C 0.524
P C 0.599
V C 0.569
E C 0.546
K C 0.521
W C 0.440
R C 0.393
N C 0.436
V C 0.546
N C 0.708
G C 0.691
V C 0.530
N H 0.575
L H 0.633
L H 0.682
E H 0.778
L H 0.763
M H 0.698
Y H 0.591
K H 0.481
D C 0.631
P C 0.628
K C 0.614
K C 0.553
W C 0.560
A H 0.502
M H 0.690
P H 0.793
F H 0.875
Q H 0.908
S H 0.929
Y H 0.929
V H 0.940
T H 0.935
L H 0.931
T H 0.924
M H 0.921
L H 0.912
Q H 0.863
S H 0.773
H H 0.626
T C 0.580
A C 0.777
P C 0.838
T C 0.870
N C 0.921
K C 0.950
K C 0.840
L E 0.580
K E 0.909
I E 0.958
M E 0.903
E E 0.750
R E 0.509
S E 0.494
I E 0.468
F C 0.602
S C 0.683
A C 0.591
R C 0.406
Y H 0.579
C H 0.660
F H 0.834
V H 0.931
E H 0.951
N H 0.951
M H 0.922
R H 0.886
R H 0.858
N H 0.687
G C 0.952
S C 0.917
L C 0.898
E C 0.946
Q H 0.899
G H 0.943
M H 0.962
Y H 0.958
N H 0.966
T H 0.969
L H 0.969
E H 0.970
E H 0.964
W H 0.934
Y H 0.898
K H 0.869
F H 0.842
I H 0.806
E H 0.762
E H 0.734
S H 0.586
I C 0.621
H C 0.849
V C 0.877
Q C 0.926
A C 0.937
D C 0.898
L E 0.731
I E 0.981
I E 0.998
Y E 0.997
L E 0.970
R E 0.728
T C 0.759
S C 0.945
P H 0.898
E H 0.970
V H 0.988
A H 0.989
Y H 0.994
E H 0.993
R H 0.995
I H 0.992
R H 0.986
Q H 0.975
R H 0.867
A C 0.953
R C 0.893
S C 0.775
E C 0.680
E C 0.592
S C 0.590
C C 0.669
V C 0.745
P C 0.911
L H 0.971
K H 0.990
Y H 0.994
L H 0.993
Q H 0.996
E H 0.996
L H 0.996
H H 0.995
E H 0.996
L H 0.996
H H 0.993
E H 0.995
D H 0.994
W H 0.989
L H 0.981
I H 0.969
H H 0.950
Q H 0.859
R H 0.834
R H 0.822
P H 0.699
Q H 0.581
S C 0.600
C C 0.869
K C 0.781
V E 0.745
L E 0.911
V E 0.950
L E 0.922
D E 0.681
A C 0.610
D C 0.813
L C 0.850
N C 0.858
L H 0.726
E H 0.805
N H 0.892
I H 0.916
G H 0.952
T H 0.974
E H 0.977
Y H 0.987
Q H 0.989
R H 0.985
S H 0.980
E H 0.966
S H 0.954
S H 0.947
I H 0.980
F H 0.980
D H 0.981
A H 0.967
I H 0.943
S H 0.880
S H 0.801
N H 0.648
Q C 0.517
Q C 0.649
P C 0.800
S C 0.789
P C 0.767
V C 0.563
L E 0.562
V E 0.512
S C 0.768
P C 0.563
S C 0.493
K H 0.542
R H 0.497
Q H 0.450
R C 0.488
V C 0.597
A C 0.757
R C 0.939
END