PFRMAT SS
TARGET T0116-500-end
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0116-500-end.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 53.9247
METHOD
MODEL 1
E H 0.952
V H 0.979
F H 0.990
L H 0.994
E H 0.995
V H 0.994
R H 0.991
E H 0.991
R H 0.983
A H 0.973
K H 0.971
R H 0.968
Q H 0.956
A H 0.935
E H 0.963
A H 0.968
L H 0.978
R H 0.982
E H 0.983
A H 0.981
A H 0.976
R H 0.981
I H 0.980
L H 0.983
A H 0.992
E H 0.994
L H 0.994
D H 0.993
V H 0.996
Y H 0.996
A H 0.994
A H 0.993
L H 0.987
A H 0.987
E H 0.979
V H 0.970
A H 0.960
V H 0.927
R H 0.858
Y C 0.527
G C 0.977
Y C 0.858
V C 0.553
R C 0.506
P E 0.544
R E 0.527
F C 0.505
G C 0.794
D C 0.847
R C 0.505
L E 0.813
Q E 0.902
I E 0.899
R E 0.721
A C 0.578
G C 0.828
R C 0.832
H C 0.861
P C 0.669
V C 0.475
V E 0.466
E E 0.471
R C 0.475
R C 0.637
T C 0.798
E C 0.671
F C 0.571
V C 0.646
P C 0.701
N C 0.696
D E 0.510
L E 0.769
E E 0.859
M E 0.745
A C 0.711
H C 0.841
E C 0.671
L E 0.883
V E 0.976
L E 0.989
I E 0.957
T E 0.765
G C 0.661
P C 0.850
N C 0.815
M C 0.765
A C 0.756
G C 0.670
K H 0.603
S H 0.920
T H 0.979
F H 0.988
L H 0.995
R H 0.999
Q H 0.999
T H 1.000
A H 1.000
L H 1.000
I H 1.000
A H 1.000
L H 0.999
L H 0.999
A H 0.995
Q H 0.978
V H 0.917
G C 0.571
S C 0.738
F C 0.761
V C 0.800
P C 0.847
A C 0.539
E C 0.490
E C 0.512
A C 0.720
H C 0.690
L C 0.566
P C 0.732
L H 0.702
F H 0.717
D H 0.764
G H 0.485
I E 0.591
Y E 0.626
T E 0.492
R E 0.510
I C 0.581
G C 0.922
A C 0.573
S C 0.532
D H 0.682
D H 0.632
L H 0.704
A H 0.596
G H 0.566
G C 0.683
K C 0.601
S H 0.606
T H 0.848
F H 0.909
M H 0.973
V H 0.983
E H 0.990
M H 0.994
E H 0.997
E H 0.998
V H 0.998
A H 0.998
L H 0.996
I H 0.991
L H 0.977
K H 0.925
E H 0.783
A C 0.686
T C 0.933
E C 0.829
N C 0.871
S C 0.500
L E 0.781
V E 0.922
L E 0.951
L E 0.815
D E 0.456
E C 0.669
V C 0.694
G C 0.823
R C 0.881
G C 0.848
T C 0.864
S C 0.905
S H 0.761
L H 0.881
D H 0.953
G H 0.970
V H 0.990
A H 0.995
I H 0.997
A H 0.998
T H 0.998
A H 0.998
V H 0.997
A H 0.994
E H 0.992
A H 0.982
L H 0.972
H H 0.952
E H 0.882
R H 0.577
R C 0.917
A C 0.868
Y C 0.514
T E 0.922
L E 0.962
F E 0.955
A E 0.789
T C 0.549
H C 0.733
Y H 0.737
F H 0.855
E H 0.858
L H 0.870
T H 0.872
A H 0.850
L H 0.781
G H 0.493
L C 0.784
P C 0.817
R C 0.790
L C 0.551
K E 0.628
N E 0.842
L E 0.899
H E 0.918
V E 0.949
A E 0.957
A E 0.975
R E 0.963
E E 0.872
E C 0.498
A C 0.871
G C 0.908
G C 0.573
L E 0.841
V E 0.949
F E 0.971
Y E 0.964
H E 0.954
Q E 0.931
V E 0.870
L E 0.680
P C 0.528
G C 0.719
P C 0.727
A C 0.809
S C 0.702
K C 0.498
S H 0.716
Y H 0.904
G H 0.970
V H 0.989
E H 0.994
V H 0.995
A H 0.997
A H 0.996
M H 0.990
A H 0.957
G C 0.969
L C 0.974
P C 0.936
K H 0.947
E H 0.986
V H 0.992
V H 0.991
A H 0.995
R H 0.995
A H 0.992
R H 0.991
A H 0.987
L H 0.975
L H 0.953
Q H 0.925
A H 0.927
M H 0.884
A H 0.885
A H 0.860
R H 0.783
R H 0.653
E H 0.635
G H 0.667
A H 0.616
L H 0.618
D H 0.615
A H 0.584
V H 0.587
L H 0.637
E H 0.701
R H 0.705
L H 0.773
L H 0.828
A H 0.856
L H 0.865
D H 0.873
P H 0.862
D H 0.853
R H 0.880
L H 0.883
T H 0.888
P H 0.959
L H 0.974
E H 0.981
A H 0.972
L H 0.968
R H 0.957
L H 0.948
L H 0.920
Q H 0.925
E H 0.926
L H 0.920
K H 0.948
A H 0.951
L H 0.962
A H 0.955
L H 0.960
G H 0.959
A H 0.942
P H 0.909
L H 0.874
D H 0.801
T H 0.616
M C 0.541
K C 0.764
G C 0.972
END