# TARGET T0116-400-600 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0116-400-600.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 78.7932 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 R 0.030 0.072 0.898 2 E 0.017 0.153 0.830 3 G 0.015 0.140 0.845 4 Y 0.019 0.095 0.885 5 D 0.008 0.053 0.939 6 P 0.001 0.930 0.069 7 D 0.001 0.956 0.044 8 L 0.001 0.986 0.014 9 D 0.001 0.988 0.012 10 A 0.001 0.992 0.007 11 L 0.001 0.993 0.007 12 R 0.001 0.992 0.008 13 A 0.001 0.988 0.012 14 A 0.001 0.985 0.015 15 H 0.001 0.969 0.030 16 R 0.001 0.961 0.039 17 E 0.001 0.961 0.038 18 G 0.001 0.969 0.031 19 V 0.001 0.977 0.022 20 A 0.001 0.984 0.016 21 Y 0.001 0.982 0.018 22 F 0.001 0.986 0.014 23 L 0.001 0.984 0.016 24 E 0.001 0.988 0.012 25 L 0.001 0.981 0.018 26 E 0.001 0.981 0.019 27 E 0.001 0.986 0.014 28 R 0.001 0.975 0.024 29 E 0.001 0.958 0.041 30 R 0.001 0.949 0.049 31 E 0.001 0.921 0.078 32 R 0.001 0.893 0.105 33 T 0.003 0.683 0.314 34 G 0.002 0.025 0.974 35 I 0.012 0.012 0.976 36 P 0.124 0.025 0.851 37 T 0.343 0.030 0.628 38 L 0.715 0.024 0.261 39 K 0.866 0.012 0.122 40 V 0.921 0.013 0.066 41 G 0.912 0.010 0.078 42 Y 0.861 0.010 0.129 43 N 0.635 0.023 0.343 44 A 0.284 0.036 0.680 45 V 0.192 0.037 0.771 46 F 0.369 0.018 0.613 47 G 0.604 0.003 0.393 48 Y 0.912 0.001 0.087 49 Y 0.977 0.001 0.022 50 L 0.980 0.002 0.018 51 E 0.959 0.001 0.040 52 V 0.803 0.002 0.195 53 T 0.391 0.004 0.605 54 R 0.097 0.143 0.760 55 P 0.053 0.244 0.703 56 Y 0.060 0.535 0.405 57 Y 0.096 0.432 0.472 58 E 0.159 0.362 0.480 59 R 0.170 0.201 0.630 60 V 0.104 0.107 0.790 61 P 0.051 0.043 0.906 62 K 0.062 0.178 0.760 63 E 0.276 0.128 0.596 64 Y 0.637 0.082 0.281 65 R 0.770 0.056 0.175 66 P 0.821 0.051 0.128 67 V 0.821 0.034 0.145 68 Q 0.779 0.024 0.196 69 T 0.619 0.022 0.359 70 L 0.407 0.023 0.570 71 K 0.244 0.018 0.737 72 D 0.234 0.016 0.750 73 R 0.500 0.021 0.479 74 Q 0.692 0.017 0.291 75 R 0.765 0.016 0.219 76 Y 0.633 0.016 0.350 77 T 0.270 0.016 0.714 78 L 0.063 0.118 0.819 79 P 0.002 0.946 0.052 80 E 0.002 0.971 0.027 81 M 0.003 0.977 0.020 82 K 0.006 0.967 0.027 83 E 0.004 0.964 0.032 84 K 0.002 0.953 0.044 85 E 0.001 0.931 0.068 86 R 0.001 0.938 0.062 87 E 0.001 0.933 0.066 88 V 0.002 0.919 0.078 89 Y 0.003 0.933 0.064 90 R 0.002 0.956 0.043 91 L 0.001 0.976 0.023 92 E 0.001 0.982 0.017 93 A 0.001 0.985 0.014 94 L 0.001 0.984 0.015 95 I 0.001 0.983 0.016 96 R 0.001 0.983 0.016 97 R 0.001 0.987 0.013 98 R 0.001 0.982 0.017 99 E 0.001 0.982 0.017 100 E 0.001 0.987 0.013 101 E 0.001 0.987 0.012 102 V 0.001 0.990 0.010 103 F 0.001 0.991 0.009 104 L 0.001 0.994 0.005 105 E 0.001 0.995 0.005 106 V 0.001 0.995 0.005 107 R 0.001 0.994 0.006 108 E 0.001 0.994 0.006 109 R 0.001 0.991 0.008 110 A 0.001 0.983 0.016 111 K 0.001 0.980 0.019 112 R 0.001 0.976 0.024 113 Q 0.001 0.963 0.037 114 A 0.001 0.948 0.051 115 E 0.001 0.965 0.035 116 A 0.001 0.970 0.029 117 L 0.001 0.977 0.022 118 R 0.001 0.982 0.018 119 E 0.001 0.982 0.017 120 A 0.001 0.977 0.023 121 A 0.001 0.972 0.028 122 R 0.001 0.975 0.025 123 I 0.001 0.972 0.028 124 L 0.001 0.974 0.026 125 A 0.001 0.987 0.013 126 E 0.001 0.991 0.008 127 L 0.001 0.989 0.011 128 D 0.001 0.983 0.016 129 V 0.001 0.992 0.007 130 Y 0.001 0.990 0.009 131 A 0.001 0.990 0.009 132 A 0.001 0.989 0.010 133 L 0.002 0.981 0.017 134 A 0.002 0.982 0.016 135 E 0.003 0.971 0.026 136 V 0.005 0.954 0.041 137 A 0.005 0.924 0.070 138 V 0.007 0.834 0.159 139 R 0.007 0.688 0.305 140 Y 0.011 0.205 0.784 141 G 0.013 0.022 0.966 142 Y 0.117 0.018 0.865 143 V 0.255 0.043 0.703 144 R 0.290 0.062 0.648 145 P 0.499 0.061 0.440 146 R 0.681 0.037 0.282 147 F 0.750 0.028 0.222 148 G 0.437 0.015 0.547 149 D 0.245 0.026 0.729 150 R 0.351 0.034 0.615 151 L 0.702 0.033 0.266 152 Q 0.769 0.034 0.197 153 I 0.723 0.071 0.206 154 R 0.485 0.098 0.417 155 A 0.211 0.162 0.627 156 G 0.153 0.068 0.779 157 R 0.174 0.029 0.797 158 H 0.171 0.012 0.818 159 P 0.353 0.047 0.600 160 V 0.517 0.067 0.416 161 V 0.534 0.114 0.352 162 E 0.500 0.071 0.429 163 R 0.476 0.051 0.474 164 R 0.285 0.067 0.648 165 T 0.168 0.022 0.811 166 E 0.462 0.017 0.522 167 F 0.575 0.017 0.407 168 V 0.393 0.025 0.582 169 P 0.242 0.024 0.735 170 N 0.153 0.087 0.761 171 D 0.410 0.091 0.499 172 L 0.778 0.037 0.185 173 E 0.872 0.019 0.110 174 M 0.733 0.024 0.243 175 A 0.193 0.008 0.800 176 H 0.061 0.010 0.929 177 E 0.182 0.007 0.811 178 L 0.776 0.002 0.222 179 V 0.943 0.002 0.056 180 L 0.983 0.002 0.015 181 I 0.952 0.003 0.045 182 T 0.776 0.006 0.217 183 G 0.373 0.011 0.616 184 P 0.105 0.040 0.856 185 N 0.053 0.096 0.851 186 M 0.079 0.135 0.785 187 A 0.054 0.159 0.787 188 G 0.038 0.248 0.714 189 K 0.032 0.513 0.455 190 S 0.024 0.884 0.092 191 T 0.013 0.970 0.017 192 F 0.011 0.981 0.009 193 L 0.006 0.990 0.003 194 R 0.003 0.995 0.002 195 Q 0.005 0.993 0.002 196 T 0.006 0.992 0.003 197 A 0.007 0.990 0.003 198 L 0.009 0.988 0.003 199 I 0.032 0.955 0.013 200 A 0.100 0.775 0.125 201 L 0.065 0.431 0.504