PFRMAT SS
TARGET T0116-400-600
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0116-400-600.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 78.7932
METHOD
MODEL 1
R C 0.898
E C 0.830
G C 0.845
Y C 0.885
D C 0.939
P H 0.930
D H 0.956
L H 0.986
D H 0.988
A H 0.992
L H 0.993
R H 0.992
A H 0.988
A H 0.985
H H 0.969
R H 0.961
E H 0.961
G H 0.969
V H 0.977
A H 0.984
Y H 0.982
F H 0.986
L H 0.984
E H 0.988
L H 0.981
E H 0.981
E H 0.986
R H 0.975
E H 0.958
R H 0.949
E H 0.921
R H 0.893
T H 0.683
G C 0.974
I C 0.976
P C 0.851
T C 0.628
L E 0.715
K E 0.866
V E 0.921
G E 0.912
Y E 0.861
N E 0.635
A C 0.680
V C 0.771
F C 0.613
G E 0.604
Y E 0.912
Y E 0.977
L E 0.980
E E 0.959
V E 0.803
T C 0.605
R C 0.760
P C 0.703
Y H 0.535
Y C 0.472
E C 0.480
R C 0.630
V C 0.790
P C 0.906
K C 0.760
E C 0.596
Y E 0.637
R E 0.770
P E 0.821
V E 0.821
Q E 0.779
T E 0.619
L C 0.570
K C 0.737
D C 0.750
R E 0.500
Q E 0.692
R E 0.765
Y E 0.633
T C 0.714
L C 0.819
P H 0.946
E H 0.971
M H 0.977
K H 0.967
E H 0.964
K H 0.953
E H 0.931
R H 0.938
E H 0.933
V H 0.919
Y H 0.933
R H 0.956
L H 0.976
E H 0.982
A H 0.985
L H 0.984
I H 0.983
R H 0.983
R H 0.987
R H 0.982
E H 0.982
E H 0.987
E H 0.987
V H 0.990
F H 0.991
L H 0.994
E H 0.995
V H 0.995
R H 0.994
E H 0.994
R H 0.991
A H 0.983
K H 0.980
R H 0.976
Q H 0.963
A H 0.948
E H 0.965
A H 0.970
L H 0.977
R H 0.982
E H 0.982
A H 0.977
A H 0.972
R H 0.975
I H 0.972
L H 0.974
A H 0.987
E H 0.991
L H 0.989
D H 0.983
V H 0.992
Y H 0.990
A H 0.990
A H 0.989
L H 0.981
A H 0.982
E H 0.971
V H 0.954
A H 0.924
V H 0.834
R H 0.688
Y C 0.784
G C 0.966
Y C 0.865
V C 0.703
R C 0.648
P E 0.499
R E 0.681
F E 0.750
G C 0.547
D C 0.729
R C 0.615
L E 0.702
Q E 0.769
I E 0.723
R E 0.485
A C 0.627
G C 0.779
R C 0.797
H C 0.818
P C 0.600
V E 0.517
V E 0.534
E E 0.500
R E 0.476
R C 0.648
T C 0.811
E C 0.522
F E 0.575
V C 0.582
P C 0.735
N C 0.761
D C 0.499
L E 0.778
E E 0.872
M E 0.733
A C 0.800
H C 0.929
E C 0.811
L E 0.776
V E 0.943
L E 0.983
I E 0.952
T E 0.776
G C 0.616
P C 0.856
N C 0.851
M C 0.785
A C 0.787
G C 0.714
K H 0.513
S H 0.884
T H 0.970
F H 0.981
L H 0.990
R H 0.995
Q H 0.993
T H 0.992
A H 0.990
L H 0.988
I H 0.955
A H 0.775
L C 0.504
END