# TARGET T0116-201-500 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0116-201-500.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 71.553 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.318 0.169 0.513 2 L 0.365 0.137 0.498 3 S 0.334 0.159 0.506 4 E 0.298 0.233 0.469 5 A 0.275 0.235 0.490 6 P 0.221 0.266 0.513 7 F 0.177 0.232 0.591 8 E 0.137 0.243 0.621 9 P 0.104 0.347 0.549 10 E 0.096 0.360 0.544 11 G 0.085 0.376 0.539 12 E 0.055 0.382 0.562 13 G 0.026 0.391 0.583 14 P 0.025 0.581 0.394 15 L 0.017 0.822 0.161 16 A 0.011 0.927 0.062 17 L 0.009 0.961 0.030 18 R 0.004 0.978 0.018 19 R 0.002 0.988 0.011 20 A 0.001 0.988 0.011 21 R 0.001 0.989 0.010 22 G 0.001 0.990 0.010 23 A 0.001 0.991 0.009 24 L 0.001 0.987 0.012 25 L 0.001 0.988 0.011 26 A 0.001 0.988 0.012 27 Y 0.001 0.979 0.020 28 A 0.001 0.974 0.025 29 Q 0.001 0.957 0.041 30 R 0.002 0.929 0.070 31 T 0.006 0.803 0.191 32 Q 0.010 0.572 0.418 33 G 0.008 0.531 0.461 34 G 0.016 0.376 0.608 35 A 0.049 0.287 0.664 36 L 0.085 0.248 0.668 37 S 0.125 0.167 0.708 38 L 0.117 0.149 0.734 39 Q 0.129 0.107 0.764 40 P 0.186 0.075 0.739 41 F 0.336 0.072 0.593 42 R 0.590 0.055 0.355 43 F 0.738 0.039 0.223 44 Y 0.703 0.026 0.272 45 D 0.525 0.028 0.446 46 P 0.264 0.078 0.658 47 G 0.286 0.033 0.681 48 A 0.560 0.024 0.416 49 F 0.700 0.014 0.286 50 M 0.868 0.010 0.122 51 R 0.901 0.007 0.092 52 L 0.815 0.009 0.176 53 P 0.391 0.012 0.596 54 E 0.016 0.834 0.150 55 A 0.004 0.894 0.102 56 T 0.004 0.947 0.049 57 L 0.014 0.931 0.055 58 R 0.025 0.926 0.049 59 A 0.027 0.904 0.069 60 L 0.044 0.786 0.170 61 E 0.121 0.599 0.280 62 V 0.171 0.541 0.288 63 F 0.277 0.274 0.450 64 E 0.230 0.182 0.588 65 P 0.085 0.167 0.747 66 L 0.067 0.139 0.794 67 R 0.022 0.085 0.893 68 G 0.015 0.028 0.957 69 Q 0.041 0.047 0.912 70 D 0.146 0.030 0.824 71 T 0.302 0.029 0.669 72 L 0.037 0.881 0.082 73 F 0.034 0.902 0.064 74 S 0.029 0.910 0.061 75 V 0.072 0.787 0.140 76 L 0.078 0.703 0.219 77 D 0.086 0.374 0.540 78 E 0.103 0.303 0.594 79 T 0.132 0.279 0.589 80 R 0.130 0.254 0.616 81 T 0.059 0.230 0.711 82 A 0.022 0.397 0.581 83 P 0.013 0.563 0.424 84 G 0.014 0.741 0.245 85 R 0.009 0.908 0.083 86 R 0.008 0.943 0.049 87 L 0.007 0.961 0.032 88 L 0.004 0.976 0.020 89 Q 0.003 0.976 0.021 90 S 0.004 0.966 0.031 91 W 0.013 0.916 0.071 92 L 0.021 0.831 0.148 93 R 0.018 0.702 0.280 94 H 0.018 0.337 0.645 95 P 0.029 0.158 0.813 96 L 0.027 0.078 0.895 97 L 0.025 0.039 0.936 98 D 0.011 0.024 0.966 99 R 0.001 0.920 0.079 100 G 0.001 0.934 0.066 101 P 0.001 0.962 0.037 102 L 0.001 0.975 0.024 103 E 0.001 0.984 0.015 104 A 0.001 0.987 0.013 105 R 0.001 0.993 0.007 106 L 0.001 0.995 0.005 107 D 0.001 0.997 0.003 108 R 0.001 0.998 0.002 109 V 0.001 0.996 0.004 110 E 0.001 0.996 0.003 111 G 0.001 0.993 0.007 112 F 0.001 0.984 0.015 113 V 0.002 0.951 0.047 114 R 0.002 0.879 0.119 115 E 0.001 0.742 0.257 116 G 0.001 0.902 0.097 117 A 0.001 0.941 0.057 118 L 0.002 0.970 0.028 119 R 0.002 0.971 0.026 120 E 0.002 0.982 0.017 121 G 0.001 0.983 0.016 122 V 0.001 0.979 0.020 123 R 0.001 0.973 0.026 124 R 0.001 0.958 0.041 125 L 0.003 0.923 0.073 126 L 0.003 0.888 0.109 127 Y 0.004 0.789 0.206 128 R 0.005 0.640 0.355 129 L 0.007 0.107 0.886 130 A 0.016 0.095 0.889 131 D 0.012 0.120 0.868 132 L 0.001 0.959 0.040 133 E 0.001 0.976 0.024 134 R 0.001 0.988 0.012 135 L 0.001 0.988 0.012 136 A 0.001 0.988 0.011 137 T 0.002 0.987 0.011 138 R 0.003 0.981 0.017 139 L 0.004 0.969 0.027 140 E 0.007 0.928 0.066 141 L 0.008 0.819 0.174 142 G 0.012 0.548 0.440 143 R 0.056 0.264 0.681 144 A 0.084 0.127 0.789 145 S 0.078 0.084 0.838 146 P 0.006 0.939 0.056 147 K 0.002 0.981 0.018 148 D 0.001 0.993 0.006 149 L 0.001 0.992 0.006 150 G 0.001 0.997 0.003 151 A 0.001 0.997 0.002 152 L 0.001 0.997 0.003 153 R 0.001 0.997 0.003 154 R 0.001 0.996 0.004 155 S 0.001 0.993 0.007 156 L 0.001 0.985 0.014 157 Q 0.001 0.977 0.022 158 I 0.001 0.976 0.024 159 L 0.001 0.980 0.019 160 P 0.001 0.985 0.015 161 E 0.001 0.987 0.013 162 L 0.001 0.983 0.016 163 R 0.001 0.983 0.017 164 A 0.001 0.976 0.023 165 L 0.002 0.955 0.043 166 L 0.003 0.904 0.093 167 G 0.003 0.843 0.153 168 E 0.004 0.752 0.244 169 E 0.009 0.531 0.460 170 V 0.012 0.386 0.602 171 G 0.013 0.190 0.797 172 L 0.011 0.158 0.831 173 P 0.013 0.162 0.825 174 D 0.011 0.231 0.758 175 L 0.002 0.902 0.097 176 S 0.001 0.940 0.059 177 P 0.001 0.965 0.034 178 L 0.001 0.988 0.012 179 K 0.001 0.992 0.008 180 E 0.001 0.990 0.009 181 E 0.001 0.990 0.010 182 L 0.002 0.983 0.015 183 E 0.003 0.973 0.024 184 A 0.004 0.964 0.032 185 A 0.020 0.913 0.067 186 L 0.040 0.826 0.135 187 V 0.028 0.655 0.317 188 E 0.014 0.592 0.394 189 D 0.010 0.362 0.628 190 P 0.012 0.176 0.811 191 P 0.036 0.308 0.656 192 L 0.127 0.305 0.567 193 K 0.128 0.332 0.540 194 V 0.109 0.286 0.605 195 S 0.043 0.213 0.745 196 E 0.045 0.086 0.869 197 G 0.260 0.061 0.679 198 G 0.517 0.039 0.444 199 L 0.763 0.029 0.208 200 I 0.705 0.032 0.263 201 R 0.332 0.049 0.619 202 E 0.074 0.095 0.830 203 G 0.027 0.089 0.884 204 Y 0.039 0.062 0.899 205 D 0.014 0.047 0.939 206 P 0.001 0.917 0.082 207 D 0.001 0.949 0.050 208 L 0.001 0.987 0.013 209 D 0.001 0.988 0.011 210 A 0.001 0.992 0.008 211 L 0.001 0.989 0.011 212 R 0.001 0.986 0.014 213 A 0.001 0.977 0.022 214 A 0.001 0.976 0.023 215 H 0.001 0.957 0.042 216 R 0.001 0.958 0.042 217 E 0.001 0.964 0.036 218 G 0.001 0.974 0.025 219 V 0.001 0.983 0.017 220 A 0.001 0.988 0.011 221 Y 0.001 0.988 0.011 222 F 0.001 0.991 0.009 223 L 0.001 0.991 0.009 224 E 0.001 0.993 0.007 225 L 0.001 0.989 0.011 226 E 0.001 0.987 0.012 227 E 0.001 0.990 0.010 228 R 0.001 0.982 0.018 229 E 0.001 0.967 0.032 230 R 0.001 0.955 0.044 231 E 0.001 0.925 0.074 232 R 0.002 0.874 0.124 233 T 0.004 0.637 0.360 234 G 0.002 0.024 0.974 235 I 0.012 0.008 0.980 236 P 0.163 0.013 0.824 237 T 0.558 0.011 0.431 238 L 0.874 0.006 0.119 239 K 0.935 0.004 0.061 240 V 0.944 0.006 0.051 241 G 0.891 0.006 0.103 242 Y 0.826 0.006 0.168 243 N 0.565 0.015 0.420 244 A 0.411 0.017 0.572 245 V 0.442 0.013 0.545 246 F 0.602 0.006 0.392 247 G 0.863 0.001 0.136 248 Y 0.974 0.001 0.026 249 Y 0.993 0.001 0.007 250 L 0.995 0.001 0.005 251 E 0.986 0.001 0.014 252 V 0.876 0.001 0.124 253 T 0.426 0.002 0.572 254 R 0.079 0.196 0.725 255 P 0.033 0.345 0.622 256 Y 0.026 0.688 0.286 257 Y 0.044 0.532 0.423 258 E 0.079 0.492 0.429 259 R 0.101 0.306 0.593 260 V 0.100 0.123 0.777 261 P 0.079 0.056 0.866 262 K 0.061 0.213 0.726 263 E 0.119 0.184 0.697 264 Y 0.370 0.172 0.458 265 R 0.584 0.109 0.307 266 P 0.688 0.083 0.229 267 V 0.701 0.072 0.227 268 Q 0.675 0.059 0.266 269 T 0.591 0.057 0.351 270 L 0.368 0.095 0.537 271 K 0.210 0.107 0.682 272 D 0.182 0.104 0.714 273 R 0.300 0.107 0.593 274 Q 0.526 0.085 0.389 275 R 0.633 0.070 0.297 276 Y 0.448 0.099 0.453 277 T 0.169 0.109 0.722 278 L 0.028 0.412 0.560 279 P 0.001 0.958 0.041 280 E 0.001 0.971 0.028 281 M 0.002 0.979 0.019 282 K 0.002 0.977 0.021 283 E 0.001 0.978 0.021 284 K 0.001 0.970 0.030 285 E 0.001 0.974 0.026 286 R 0.001 0.973 0.027 287 E 0.001 0.968 0.032 288 V 0.001 0.953 0.046 289 Y 0.001 0.958 0.041 290 R 0.001 0.966 0.033 291 L 0.001 0.983 0.016 292 E 0.001 0.990 0.010 293 A 0.001 0.993 0.007 294 L 0.001 0.988 0.012 295 I 0.001 0.979 0.020 296 R 0.003 0.965 0.032 297 R 0.002 0.948 0.050 298 R 0.007 0.840 0.153 299 E 0.009 0.501 0.489 300 E 0.003 0.037 0.960