PFRMAT SS
TARGET T0116-201-500
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0116-201-500.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 71.553
METHOD
MODEL 1
M C 0.513
L C 0.498
S C 0.506
E C 0.469
A C 0.490
P C 0.513
F C 0.591
E C 0.621
P C 0.549
E C 0.544
G C 0.539
E C 0.562
G C 0.583
P H 0.581
L H 0.822
A H 0.927
L H 0.961
R H 0.978
R H 0.988
A H 0.988
R H 0.989
G H 0.990
A H 0.991
L H 0.987
L H 0.988
A H 0.988
Y H 0.979
A H 0.974
Q H 0.957
R H 0.929
T H 0.803
Q H 0.572
G H 0.531
G C 0.608
A C 0.664
L C 0.668
S C 0.708
L C 0.734
Q C 0.764
P C 0.739
F C 0.593
R E 0.590
F E 0.738
Y E 0.703
D E 0.525
P C 0.658
G C 0.681
A E 0.560
F E 0.700
M E 0.868
R E 0.901
L E 0.815
P C 0.596
E H 0.834
A H 0.894
T H 0.947
L H 0.931
R H 0.926
A H 0.904
L H 0.786
E H 0.599
V H 0.541
F C 0.450
E C 0.588
P C 0.747
L C 0.794
R C 0.893
G C 0.957
Q C 0.912
D C 0.824
T C 0.669
L H 0.881
F H 0.902
S H 0.910
V H 0.787
L H 0.703
D C 0.540
E C 0.594
T C 0.589
R C 0.616
T C 0.711
A C 0.581
P H 0.563
G H 0.741
R H 0.908
R H 0.943
L H 0.961
L H 0.976
Q H 0.976
S H 0.966
W H 0.916
L H 0.831
R H 0.702
H C 0.645
P C 0.813
L C 0.895
L C 0.936
D C 0.966
R H 0.920
G H 0.934
P H 0.962
L H 0.975
E H 0.984
A H 0.987
R H 0.993
L H 0.995
D H 0.997
R H 0.998
V H 0.996
E H 0.996
G H 0.993
F H 0.984
V H 0.951
R H 0.879
E H 0.742
G H 0.902
A H 0.941
L H 0.970
R H 0.971
E H 0.982
G H 0.983
V H 0.979
R H 0.973
R H 0.958
L H 0.923
L H 0.888
Y H 0.789
R H 0.640
L C 0.886
A C 0.889
D C 0.868
L H 0.959
E H 0.976
R H 0.988
L H 0.988
A H 0.988
T H 0.987
R H 0.981
L H 0.969
E H 0.928
L H 0.819
G H 0.548
R C 0.681
A C 0.789
S C 0.838
P H 0.939
K H 0.981
D H 0.993
L H 0.992
G H 0.997
A H 0.997
L H 0.997
R H 0.997
R H 0.996
S H 0.993
L H 0.985
Q H 0.977
I H 0.976
L H 0.980
P H 0.985
E H 0.987
L H 0.983
R H 0.983
A H 0.976
L H 0.955
L H 0.904
G H 0.843
E H 0.752
E H 0.531
V C 0.602
G C 0.797
L C 0.831
P C 0.825
D C 0.758
L H 0.902
S H 0.940
P H 0.965
L H 0.988
K H 0.992
E H 0.990
E H 0.990
L H 0.983
E H 0.973
A H 0.964
A H 0.913
L H 0.826
V H 0.655
E H 0.592
D C 0.628
P C 0.811
P C 0.656
L C 0.567
K C 0.540
V C 0.605
S C 0.745
E C 0.869
G C 0.679
G E 0.517
L E 0.763
I E 0.705
R C 0.619
E C 0.830
G C 0.884
Y C 0.899
D C 0.939
P H 0.917
D H 0.949
L H 0.987
D H 0.988
A H 0.992
L H 0.989
R H 0.986
A H 0.977
A H 0.976
H H 0.957
R H 0.958
E H 0.964
G H 0.974
V H 0.983
A H 0.988
Y H 0.988
F H 0.991
L H 0.991
E H 0.993
L H 0.989
E H 0.987
E H 0.990
R H 0.982
E H 0.967
R H 0.955
E H 0.925
R H 0.874
T H 0.637
G C 0.974
I C 0.980
P C 0.824
T E 0.558
L E 0.874
K E 0.935
V E 0.944
G E 0.891
Y E 0.826
N E 0.565
A C 0.572
V C 0.545
F E 0.602
G E 0.863
Y E 0.974
Y E 0.993
L E 0.995
E E 0.986
V E 0.876
T C 0.572
R C 0.725
P C 0.622
Y H 0.688
Y H 0.532
E H 0.492
R C 0.593
V C 0.777
P C 0.866
K C 0.726
E C 0.697
Y C 0.458
R E 0.584
P E 0.688
V E 0.701
Q E 0.675
T E 0.591
L C 0.537
K C 0.682
D C 0.714
R C 0.593
Q E 0.526
R E 0.633
Y C 0.453
T C 0.722
L C 0.560
P H 0.958
E H 0.971
M H 0.979
K H 0.977
E H 0.978
K H 0.970
E H 0.974
R H 0.973
E H 0.968
V H 0.953
Y H 0.958
R H 0.966
L H 0.983
E H 0.990
A H 0.993
L H 0.988
I H 0.979
R H 0.965
R H 0.948
R H 0.840
E H 0.501
E C 0.960
END