PFRMAT SS
TARGET T0116-1-300
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0116-1-300.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 66.4928
METHOD
MODEL 1
M C 0.869
E C 0.759
G C 0.728
M C 0.712
L C 0.802
K C 0.915
G C 0.595
E C 0.560
G C 0.560
P C 0.551
G C 0.606
P C 0.603
L C 0.738
P C 0.679
P H 0.932
L H 0.955
L H 0.987
Q H 0.990
Q H 0.994
Y H 0.992
V H 0.989
E H 0.982
L H 0.954
R H 0.871
D H 0.670
Q C 0.675
Y C 0.984
P C 0.954
D C 0.854
Y E 0.941
L E 0.993
L E 0.996
L E 0.996
F E 0.950
Q E 0.793
V C 0.742
G C 0.953
D C 0.608
F E 0.629
Y E 0.740
E E 0.812
C E 0.674
F E 0.429
G H 0.688
E H 0.857
D H 0.965
A H 0.991
E H 0.996
R H 0.997
L H 0.996
A H 0.994
R H 0.992
A H 0.969
L H 0.917
G H 0.595
L C 0.449
V E 0.375
L E 0.634
T E 0.695
H E 0.667
K E 0.499
T C 0.749
S C 0.891
K C 0.921
D C 0.875
F C 0.789
T C 0.613
T E 0.510
P E 0.496
M E 0.599
A E 0.596
G E 0.519
I C 0.627
P C 0.833
L H 0.891
R H 0.951
A H 0.971
F H 0.977
E H 0.987
A H 0.993
Y H 0.994
A H 0.995
E H 0.997
R H 0.996
L H 0.995
L H 0.993
K H 0.984
M H 0.928
G C 0.976
F C 0.909
R E 0.615
L E 0.945
A E 0.978
V E 0.977
A E 0.913
D E 0.751
Q C 0.560
V C 0.778
E C 0.849
P C 0.946
A H 0.588
E H 0.669
E H 0.709
A H 0.538
E C 0.542
G C 0.735
L C 0.603
V H 0.492
R H 0.605
R H 0.632
E E 0.476
V E 0.578
T E 0.557
Q E 0.612
L E 0.570
L C 0.476
T C 0.824
P C 0.899
G C 0.893
T C 0.745
L C 0.716
L C 0.743
Q H 0.509
E H 0.568
S H 0.573
L C 0.557
L C 0.685
P C 0.826
R C 0.905
E C 0.920
A C 0.901
N C 0.750
Y E 0.867
L E 0.981
A E 0.995
A E 0.996
I E 0.982
A E 0.901
T C 0.622
G C 0.883
D C 0.583
G E 0.711
W E 0.914
G E 0.976
L E 0.985
A E 0.990
F E 0.984
L E 0.944
D E 0.789
V C 0.789
S C 0.902
T C 0.887
G C 0.865
E E 0.789
F E 0.913
K E 0.915
G E 0.901
T E 0.654
V E 0.526
L C 0.643
K C 0.805
S C 0.894
K H 0.869
S H 0.916
A H 0.934
L H 0.991
Y H 0.992
D H 0.992
E H 0.989
L H 0.980
F H 0.964
R H 0.854
H C 0.819
R C 0.961
P C 0.721
A C 0.462
E E 0.732
V E 0.892
L E 0.801
L C 0.532
A C 0.878
P C 0.828
E C 0.723
L C 0.671
L C 0.680
E C 0.540
N C 0.487
G H 0.490
A H 0.473
F H 0.440
L H 0.401
D H 0.397
E E 0.427
F E 0.427
R E 0.479
K E 0.406
R C 0.492
F C 0.614
P C 0.582
V C 0.445
M E 0.420
L E 0.439
S C 0.429
E C 0.467
A C 0.478
P C 0.528
F C 0.591
E C 0.651
P C 0.583
E C 0.526
G C 0.488
E C 0.479
G C 0.536
P H 0.606
L H 0.846
A H 0.930
L H 0.962
R H 0.976
R H 0.987
A H 0.988
R H 0.989
G H 0.991
A H 0.992
L H 0.992
L H 0.993
A H 0.994
Y H 0.990
A H 0.985
Q H 0.974
R H 0.958
T H 0.893
Q H 0.703
G C 0.508
G C 0.615
A C 0.645
L C 0.652
S C 0.733
L C 0.832
Q C 0.792
P C 0.676
F C 0.603
R C 0.507
F E 0.489
Y E 0.506
D C 0.545
P C 0.642
G C 0.638
A E 0.540
F E 0.684
M E 0.852
R E 0.888
L E 0.806
P C 0.585
E H 0.839
A H 0.901
T H 0.953
L H 0.946
R H 0.943
A H 0.903
L H 0.826
E H 0.714
V H 0.638
F C 0.462
E C 0.609
P C 0.734
L C 0.792
R C 0.895
G C 0.962
Q C 0.910
D C 0.815
T C 0.681
L H 0.904
F H 0.919
S H 0.921
V H 0.808
L H 0.714
D C 0.504
E C 0.571
T C 0.615
R C 0.666
T C 0.755
A C 0.644
P C 0.513
G H 0.683
R H 0.909
R H 0.944
L H 0.961
L H 0.977
Q H 0.973
S H 0.963
W H 0.912
L H 0.843
R H 0.774
H C 0.648
P C 0.728
L C 0.755
L C 0.832
D C 0.883
R C 0.921
G C 0.980
END