PFRMAT SS
TARGET T0116
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0116.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 91.428
METHOD
MODEL 1
M C 0.902
E C 0.808
G C 0.738
M C 0.707
L C 0.808
K C 0.909
G C 0.659
E C 0.608
G C 0.596
P H 0.490
G C 0.549
P C 0.548
L C 0.736
P C 0.718
P H 0.892
L H 0.930
L H 0.978
Q H 0.982
Q H 0.988
Y H 0.987
V H 0.982
E H 0.974
L H 0.943
R H 0.860
D H 0.684
Q C 0.656
Y C 0.985
P C 0.950
D C 0.825
Y E 0.951
L E 0.993
L E 0.996
L E 0.996
F E 0.949
Q E 0.787
V C 0.736
G C 0.953
D C 0.609
F E 0.623
Y E 0.715
E E 0.795
C E 0.655
F E 0.413
G H 0.742
E H 0.889
D H 0.969
A H 0.991
E H 0.995
R H 0.996
L H 0.995
A H 0.991
R H 0.990
A H 0.959
L H 0.896
G C 0.688
L C 0.679
V C 0.434
L E 0.567
T E 0.623
H E 0.632
K E 0.474
T C 0.634
S C 0.817
K C 0.867
D C 0.835
F C 0.758
T C 0.612
T E 0.506
P E 0.469
M E 0.446
A C 0.528
G C 0.711
I C 0.763
P C 0.856
L H 0.868
R H 0.924
A H 0.952
F H 0.966
E H 0.981
A H 0.990
Y H 0.993
A H 0.994
E H 0.997
R H 0.997
L H 0.996
L H 0.994
K H 0.986
M H 0.933
G C 0.978
F C 0.883
R E 0.683
L E 0.952
A E 0.976
V E 0.970
A E 0.882
D E 0.692
Q C 0.589
V C 0.781
E C 0.834
P C 0.934
A H 0.740
E H 0.783
E H 0.811
A H 0.684
E H 0.544
G C 0.810
L C 0.686
V C 0.474
R H 0.456
R H 0.504
E E 0.489
V E 0.565
T E 0.549
Q E 0.598
L E 0.530
L C 0.488
T C 0.818
P C 0.868
G C 0.868
T C 0.726
L C 0.683
L C 0.680
Q C 0.645
E C 0.609
S C 0.563
L C 0.647
L C 0.735
P C 0.783
R C 0.802
E C 0.826
A C 0.837
N C 0.719
Y E 0.707
L E 0.911
A E 0.970
A E 0.982
I E 0.974
A E 0.928
T E 0.705
G C 0.700
D C 0.677
G E 0.628
W E 0.850
G E 0.946
L E 0.970
A E 0.981
F E 0.976
L E 0.929
D E 0.767
V C 0.786
S C 0.898
T C 0.907
G C 0.902
E E 0.662
F E 0.862
K E 0.886
G E 0.864
T E 0.566
V C 0.567
L C 0.681
K C 0.807
S C 0.888
K H 0.860
S H 0.898
A H 0.915
L H 0.985
Y H 0.987
D H 0.985
E H 0.978
L H 0.960
F H 0.931
R H 0.794
H C 0.793
R C 0.955
P C 0.589
A C 0.383
E E 0.632
V E 0.835
L E 0.738
L C 0.563
A C 0.881
P C 0.820
E C 0.748
L C 0.652
L C 0.648
E C 0.527
N H 0.471
G H 0.523
A H 0.564
F H 0.598
L H 0.548
D H 0.528
E H 0.513
F H 0.525
R H 0.465
K H 0.445
R C 0.486
F C 0.568
P C 0.588
V C 0.504
M C 0.505
L C 0.519
S C 0.547
E C 0.517
A C 0.534
P C 0.560
F C 0.643
E C 0.655
P C 0.641
E C 0.624
G C 0.595
E C 0.593
G C 0.515
P H 0.655
L H 0.845
A H 0.920
L H 0.947
R H 0.967
R H 0.982
A H 0.985
R H 0.987
G H 0.989
A H 0.992
L H 0.991
L H 0.993
A H 0.993
Y H 0.989
A H 0.985
Q H 0.976
R H 0.961
T H 0.898
Q H 0.735
G H 0.513
G C 0.674
A C 0.717
L C 0.675
S C 0.666
L C 0.680
Q C 0.695
P C 0.670
F C 0.549
R E 0.539
F E 0.709
Y E 0.716
D E 0.578
P C 0.594
G C 0.644
A E 0.523
F E 0.661
M E 0.853
R E 0.892
L E 0.815
P C 0.590
E H 0.798
A H 0.866
T H 0.927
L H 0.909
R H 0.904
A H 0.861
L H 0.730
E H 0.589
V H 0.539
F C 0.482
E C 0.601
P C 0.728
L C 0.767
R C 0.870
G C 0.945
Q C 0.898
D C 0.807
T C 0.662
L H 0.907
F H 0.925
S H 0.929
V H 0.837
L H 0.778
D H 0.519
E C 0.473
T C 0.569
R C 0.617
T C 0.712
A C 0.565
P H 0.575
G H 0.728
R H 0.902
R H 0.930
L H 0.949
L H 0.967
Q H 0.962
S H 0.952
W H 0.891
L H 0.801
R H 0.662
H C 0.716
P C 0.832
L C 0.885
L C 0.928
D C 0.960
R H 0.925
G H 0.950
P H 0.969
L H 0.973
E H 0.979
A H 0.980
R H 0.983
L H 0.985
D H 0.990
R H 0.994
V H 0.990
E H 0.993
G H 0.990
F H 0.983
V H 0.967
R H 0.943
E H 0.933
G H 0.924
A H 0.941
L H 0.966
R H 0.965
E H 0.976
G H 0.976
V H 0.966
R H 0.956
R H 0.933
L H 0.893
L H 0.794
Y H 0.667
R H 0.533
L C 0.817
A C 0.837
D C 0.812
L H 0.962
E H 0.976
R H 0.988
L H 0.987
A H 0.985
T H 0.984
R H 0.976
L H 0.959
E H 0.904
L H 0.766
G C 0.602
R C 0.795
A C 0.842
S C 0.903
P H 0.937
K H 0.977
D H 0.991
L H 0.990
G H 0.994
A H 0.996
L H 0.994
R H 0.995
R H 0.995
S H 0.991
L H 0.987
Q H 0.983
I H 0.985
L H 0.986
P H 0.990
E H 0.992
L H 0.991
R H 0.989
A H 0.984
L H 0.969
L H 0.914
G H 0.796
E H 0.618
E C 0.584
V C 0.635
G C 0.739
L C 0.778
P C 0.773
D C 0.687
L H 0.584
S H 0.750
P H 0.846
L H 0.953
K H 0.966
E H 0.976
E H 0.978
L H 0.971
E H 0.968
A H 0.957
A H 0.917
L H 0.880
V H 0.812
E H 0.724
D H 0.597
P H 0.687
P H 0.692
L H 0.589
K H 0.470
V C 0.464
S C 0.687
E C 0.788
G C 0.691
G E 0.481
L E 0.670
I E 0.651
R C 0.681
E C 0.855
G C 0.891
Y C 0.888
D C 0.931
P H 0.916
D H 0.946
L H 0.989
D H 0.990
A H 0.992
L H 0.989
R H 0.987
A H 0.981
A H 0.980
H H 0.964
R H 0.966
E H 0.970
G H 0.972
V H 0.979
A H 0.984
Y H 0.984
F H 0.991
L H 0.990
E H 0.993
L H 0.989
E H 0.986
E H 0.987
R H 0.975
E H 0.952
R H 0.937
E H 0.898
R H 0.864
T H 0.634
G C 0.949
I C 0.964
P C 0.861
T C 0.710
L E 0.543
K E 0.753
V E 0.853
G E 0.871
Y E 0.825
N E 0.657
A C 0.618
V C 0.741
F C 0.736
G C 0.676
Y E 0.841
Y E 0.964
L E 0.979
E E 0.966
V E 0.819
T C 0.613
R C 0.733
P C 0.658
Y H 0.581
Y C 0.471
E C 0.434
R C 0.524
V C 0.690
P C 0.791
K C 0.741
E C 0.646
Y E 0.595
R E 0.755
P E 0.813
V E 0.813
Q E 0.774
T E 0.608
L C 0.612
K C 0.781
D C 0.755
R C 0.517
Q E 0.649
R E 0.742
Y E 0.621
T C 0.726
L C 0.804
P H 0.956
E H 0.976
M H 0.983
K H 0.977
E H 0.977
K H 0.970
E H 0.956
R H 0.962
E H 0.958
V H 0.949
Y H 0.956
R H 0.966
L H 0.981
E H 0.983
A H 0.982
L H 0.980
I H 0.976
R H 0.978
R H 0.986
R H 0.984
E H 0.987
E H 0.992
E H 0.993
V H 0.994
F H 0.994
L H 0.996
E H 0.996
V H 0.995
R H 0.993
E H 0.993
R H 0.989
A H 0.980
K H 0.977
R H 0.974
Q H 0.962
A H 0.939
E H 0.964
A H 0.969
L H 0.979
R H 0.983
E H 0.984
A H 0.979
A H 0.973
R H 0.978
I H 0.977
L H 0.981
A H 0.992
E H 0.994
L H 0.995
D H 0.994
V H 0.997
Y H 0.996
A H 0.996
A H 0.994
L H 0.988
A H 0.988
E H 0.976
V H 0.965
A H 0.953
V H 0.915
R H 0.857
Y C 0.532
G C 0.981
Y C 0.912
V C 0.632
R C 0.554
P E 0.605
R E 0.741
F E 0.783
G E 0.511
D C 0.688
R C 0.543
L E 0.782
Q E 0.843
I E 0.829
R E 0.633
A C 0.581
G C 0.781
R C 0.813
H C 0.867
P C 0.673
V C 0.479
V E 0.464
E E 0.457
R E 0.471
R C 0.588
T C 0.788
E C 0.552
F E 0.523
V C 0.591
P C 0.658
N C 0.696
D E 0.498
L E 0.779
E E 0.861
M E 0.730
A C 0.786
H C 0.914
E C 0.781
L E 0.788
V E 0.948
L E 0.982
I E 0.942
T E 0.748
G C 0.645
P C 0.847
N C 0.828
M C 0.777
A C 0.774
G C 0.691
K H 0.570
S H 0.909
T H 0.976
F H 0.987
L H 0.995
R H 0.999
Q H 0.999
T H 1.000
A H 1.000
L H 1.000
I H 1.000
A H 1.000
L H 0.999
L H 0.999
A H 0.995
Q H 0.977
V H 0.915
G H 0.504
S C 0.703
F C 0.756
V C 0.813
P C 0.857
A H 0.485
E H 0.540
E H 0.474
A C 0.704
H C 0.689
L C 0.564
P C 0.691
L H 0.812
F H 0.837
D H 0.860
G H 0.661
I H 0.580
Y H 0.522
T H 0.538
R C 0.401
I C 0.674
G C 0.941
A H 0.567
S H 0.596
D H 0.753
D H 0.699
L H 0.773
A H 0.705
G H 0.683
G C 0.624
K C 0.581
S H 0.650
T H 0.870
F H 0.928
M H 0.980
V H 0.988
E H 0.993
M H 0.996
E H 0.998
E H 0.999
V H 0.999
A H 0.999
L H 0.997
I H 0.994
L H 0.982
K H 0.933
E H 0.782
A C 0.748
T C 0.940
E C 0.800
N C 0.850
S C 0.504
L E 0.746
V E 0.907
L E 0.944
L E 0.805
D E 0.473
E C 0.653
V C 0.695
G C 0.827
R C 0.874
G C 0.839
T C 0.860
S C 0.912
S H 0.758
L H 0.878
D H 0.951
G H 0.969
V H 0.990
A H 0.995
I H 0.997
A H 0.998
T H 0.998
A H 0.998
V H 0.996
A H 0.994
E H 0.992
A H 0.981
L H 0.972
H H 0.955
E H 0.896
R H 0.654
R C 0.865
A C 0.859
Y C 0.582
T E 0.901
L E 0.950
F E 0.943
A E 0.764
T C 0.546
H C 0.726
Y H 0.737
F H 0.851
E H 0.851
L H 0.863
T H 0.862
A H 0.843
L H 0.777
G C 0.535
L C 0.798
P C 0.803
R C 0.801
L C 0.500
K E 0.724
N E 0.894
L E 0.930
H E 0.940
V E 0.959
A E 0.967
A E 0.986
R E 0.981
E E 0.919
E E 0.595
A C 0.874
G C 0.919
G C 0.544
L E 0.860
V E 0.955
F E 0.974
Y E 0.965
H E 0.954
Q E 0.932
V E 0.875
L E 0.682
P C 0.537
G C 0.721
P C 0.725
A C 0.817
S C 0.698
K C 0.497
S H 0.724
Y H 0.914
G H 0.976
V H 0.992
E H 0.995
V H 0.997
A H 0.998
A H 0.997
M H 0.992
A H 0.966
G C 0.966
L C 0.976
P C 0.934
K H 0.950
E H 0.986
V H 0.992
V H 0.991
A H 0.995
R H 0.995
A H 0.992
R H 0.991
A H 0.986
L H 0.977
L H 0.962
Q H 0.952
A H 0.961
M H 0.942
A H 0.956
A H 0.949
R H 0.943
R H 0.892
E H 0.865
G H 0.861
A H 0.800
L H 0.785
D H 0.766
A H 0.741
V H 0.739
L H 0.799
E H 0.816
R H 0.809
L H 0.805
L H 0.792
A H 0.783
L H 0.726
D H 0.626
P H 0.542
D H 0.520
R C 0.514
L C 0.529
T C 0.573
P H 0.955
L H 0.972
E H 0.981
A H 0.981
L H 0.982
R H 0.988
L H 0.991
L H 0.989
Q H 0.993
E H 0.992
L H 0.992
K H 0.988
A H 0.980
L H 0.975
A H 0.934
L H 0.916
G H 0.884
A H 0.596
P H 0.506
L H 0.732
D H 0.683
T H 0.566
M C 0.549
K C 0.760
G C 0.979
END