PFRMAT SS
TARGET T0115-outer
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0115-outer.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 75.4612
METHOD
MODEL 1
M C 0.777
R C 0.657
E C 0.608
I C 0.601
M C 0.713
K C 0.637
V E 0.756
R E 0.930
V E 0.967
K E 0.943
A E 0.860
P E 0.742
C E 0.497
T C 0.605
S C 0.567
A C 0.584
N C 0.537
L C 0.561
G C 0.812
V C 0.823
G C 0.842
F C 0.699
D C 0.557
V E 0.358
F E 0.457
G H 0.422
L H 0.430
C H 0.447
L H 0.405
K C 0.622
E C 0.836
P C 0.885
Y C 0.893
D E 0.574
V E 0.955
I E 0.977
E E 0.991
V E 0.990
E E 0.961
A E 0.885
I C 0.565
D C 0.868
D C 0.912
K C 0.777
E E 0.555
I E 0.842
I E 0.864
I E 0.816
E E 0.616
V E 0.485
D C 0.537
D C 0.659
K C 0.769
N C 0.813
I C 0.730
P C 0.735
T C 0.734
D C 0.744
P C 0.572
D C 0.541
K H 0.629
N H 0.595
V H 0.799
A H 0.933
G H 0.971
I H 0.987
V H 0.992
A H 0.995
K H 0.997
K H 0.996
M H 0.993
I H 0.988
D H 0.973
D H 0.941
F H 0.822
N C 0.820
I C 0.854
G C 0.872
K C 0.899
G C 0.888
V E 0.650
K E 0.947
I E 0.993
T E 0.994
I E 0.981
K E 0.805
K C 0.684
G C 0.807
V C 0.842
K C 0.834
A C 0.696
G C 0.661
S C 0.591
G C 0.651
L C 0.677
G C 0.719
S H 0.630
S H 0.827
A H 0.959
A H 0.978
S H 0.990
S H 0.995
A H 0.997
G H 0.998
T H 0.998
A H 0.997
Y H 0.997
A H 0.993
I H 0.985
N H 0.977
E H 0.956
L H 0.938
F H 0.868
K C 0.760
L C 0.833
N C 0.969
L C 0.971
D C 0.963
K H 0.943
L H 0.975
K H 0.986
L H 0.985
V H 0.987
D H 0.989
Y H 0.985
A H 0.983
S H 0.972
Y H 0.942
G H 0.875
E H 0.729
L H 0.493
A C 0.600
S C 0.830
- C 0.826
D C 0.761
K C 0.660
V C 0.606
Y C 0.602
G C 0.453
I H 0.421
T H 0.531
I H 0.632
S H 0.681
G H 0.669
S H 0.643
G H 0.525
P H 0.404
S C 0.492
I C 0.420
I E 0.458
A E 0.477
F E 0.489
P E 0.450
K C 0.516
E C 0.644
E C 0.803
F C 0.827
I H 0.631
D H 0.700
E H 0.734
V H 0.717
E H 0.715
N H 0.652
I H 0.543
L C 0.548
R C 0.773
D C 0.802
Y C 0.659
Y C 0.478
E E 0.350
N E 0.377
T H 0.427
I H 0.524
R H 0.517
T H 0.563
E C 0.510
V C 0.632
G C 0.886
K C 0.806
G C 0.740
V C 0.581
E C 0.492
V C 0.519
V C 0.819
END