PFRMAT SS TARGET T0115 AUTHOR 3670-4530-6947 METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 10 METHOD 7 10 METHOD 5 10 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment T0115.t2k.a2m.gz METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 69.8709 METHOD MODEL 1 M C 0.821 R C 0.848 E C 0.770 I C 0.594 M E 0.663 K E 0.891 V E 0.957 R E 0.967 V E 0.965 K E 0.868 A C 0.505 P C 0.737 C C 0.598 T E 0.424 S E 0.533 A E 0.531 N E 0.387 L C 0.439 G C 0.584 V C 0.619 G C 0.540 F C 0.456 D C 0.380 V E 0.362 F H 0.391 G H 0.445 L H 0.455 C E 0.445 L E 0.439 K C 0.683 E C 0.861 P C 0.859 Y C 0.840 D E 0.547 V E 0.955 I E 0.977 E E 0.990 V E 0.987 E E 0.945 A E 0.848 I C 0.615 D C 0.878 D C 0.935 K C 0.716 E E 0.771 I E 0.946 I E 0.954 I E 0.898 E E 0.706 V C 0.518 D C 0.659 D C 0.779 K C 0.858 N C 0.872 I C 0.796 P C 0.722 T C 0.690 D C 0.673 P C 0.661 D C 0.517 K H 0.610 N H 0.743 V H 0.886 A H 0.964 G H 0.983 I H 0.992 V H 0.995 A H 0.995 K H 0.997 K H 0.996 M H 0.991 I H 0.985 D H 0.967 D H 0.933 F H 0.783 N C 0.881 I C 0.902 G C 0.887 K C 0.900 G C 0.858 V E 0.695 K E 0.962 I E 0.995 T E 0.996 I E 0.984 K E 0.827 K C 0.687 G C 0.810 V C 0.836 K C 0.824 A C 0.729 G C 0.718 S C 0.653 G C 0.681 L C 0.705 G C 0.742 S H 0.654 S H 0.838 A H 0.965 A H 0.980 S H 0.991 S H 0.996 A H 0.997 G H 0.998 T H 0.998 A H 0.997 Y H 0.996 A H 0.993 I H 0.985 N H 0.978 E H 0.962 L H 0.946 F H 0.873 K C 0.907 L C 0.903 N C 0.959 L C 0.959 D C 0.956 K H 0.950 L H 0.976 K H 0.987 L H 0.983 V H 0.984 D H 0.986 Y H 0.982 A H 0.980 S H 0.974 Y H 0.953 G H 0.904 E H 0.840 L H 0.787 A H 0.671 S H 0.416 S C 0.419 G C 0.543 A C 0.624 K C 0.678 H C 0.789 A C 0.897 D C 0.850 N C 0.833 V C 0.502 A H 0.371 P H 0.515 A E 0.449 I E 0.493 F E 0.381 G C 0.781 G C 0.856 F E 0.696 T E 0.910 M E 0.933 V E 0.902 T E 0.690 N C 0.695 Y C 0.875 E C 0.926 P C 0.794 L C 0.584 E E 0.614 V E 0.708 L E 0.650 H E 0.632 I E 0.486 P C 0.595 I C 0.688 D C 0.796 F C 0.889 K C 0.875 L C 0.665 D E 0.673 I E 0.962 L E 0.989 I E 0.990 A E 0.958 I E 0.684 P C 0.779 N C 0.883 I C 0.744 S C 0.717 I C 0.745 N C 0.794 T H 0.831 K H 0.968 E H 0.975 A H 0.967 R H 0.960 E H 0.943 I H 0.911 L H 0.670 P H 0.589 K H 0.518 A C 0.597 V C 0.765 G C 0.832 L H 0.602 K H 0.729 D H 0.820 L H 0.817 V H 0.822 N H 0.851 N H 0.853 V H 0.873 G H 0.902 K H 0.929 A H 0.956 C H 0.974 G H 0.985 M H 0.991 V H 0.989 Y H 0.991 A H 0.987 L H 0.976 Y H 0.956 N H 0.900 K C 0.700 D C 0.832 K H 0.881 S H 0.936 L H 0.957 F H 0.954 G H 0.966 R H 0.963 Y H 0.960 M H 0.929 M H 0.877 S H 0.827 D H 0.584 K C 0.503 V H 0.498 I C 0.489 E H 0.537 P H 0.624 V H 0.709 R H 0.716 G H 0.720 K H 0.749 L H 0.725 I H 0.523 P H 0.860 N H 0.918 Y H 0.975 F H 0.988 K H 0.991 I H 0.992 K H 0.989 E H 0.980 E H 0.961 V H 0.886 K H 0.747 D H 0.523 K C 0.846 V C 0.753 Y C 0.533 G E 0.676 I E 0.792 T E 0.745 I E 0.704 S E 0.478 G C 0.684 S C 0.778 G C 0.768 P C 0.659 S E 0.570 I E 0.818 I E 0.850 A E 0.888 F E 0.794 P C 0.643 K C 0.902 E C 0.603 E H 0.577 F H 0.794 I H 0.955 D H 0.978 E H 0.988 V H 0.996 E H 0.996 N H 0.995 I H 0.992 L H 0.981 R H 0.966 D H 0.945 Y H 0.860 Y H 0.778 E H 0.732 N H 0.659 T H 0.498 I C 0.516 R C 0.738 T C 0.713 E C 0.745 V C 0.774 G C 0.752 K E 0.502 G E 0.755 V E 0.833 E E 0.838 V E 0.663 V C 0.757 END