PFRMAT SS TARGET T0115 AUTHOR 3670-4530-6947 METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 10 METHOD 7 10 METHOD 5 10 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment T0115-family.a2m.gz METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 21.56 METHOD MODEL 1 M C 0.856 R C 0.716 E C 0.515 I E 0.609 M E 0.817 K E 0.944 V E 0.978 R E 0.985 V E 0.990 K E 0.981 A E 0.896 P E 0.545 C C 0.701 T C 0.701 S C 0.551 A C 0.561 N C 0.627 L C 0.678 G C 0.768 V C 0.798 G C 0.733 F C 0.510 D H 0.453 V H 0.576 F H 0.539 G H 0.500 L H 0.446 C C 0.430 L C 0.549 K C 0.861 E C 0.920 P C 0.931 Y C 0.938 D C 0.887 V E 0.872 I E 0.976 E E 0.990 V E 0.989 E E 0.954 A E 0.886 I E 0.579 D C 0.738 D C 0.860 K C 0.742 E E 0.622 I E 0.846 I E 0.865 I E 0.811 E E 0.566 V C 0.551 D C 0.625 D C 0.751 K C 0.780 N C 0.828 I C 0.805 P C 0.793 T C 0.801 D C 0.811 P C 0.827 D C 0.682 K H 0.541 N H 0.668 V H 0.938 A H 0.976 G H 0.992 I H 0.997 V H 0.998 A H 0.998 K H 0.998 K H 0.996 M H 0.992 I H 0.988 D H 0.974 D H 0.953 F H 0.849 N C 0.943 I C 0.923 G C 0.893 K C 0.931 G C 0.898 V E 0.654 K E 0.957 I E 0.994 T E 0.993 I E 0.972 K E 0.747 K C 0.688 G C 0.810 V C 0.773 K C 0.717 A C 0.660 G C 0.671 S C 0.650 G C 0.698 L C 0.621 G C 0.577 S H 0.725 S H 0.927 A H 0.992 A H 0.998 S H 0.999 S H 1.000 A H 1.000 G H 1.000 T H 1.000 A H 1.000 Y H 1.000 A H 0.999 I H 0.994 N H 0.985 E H 0.955 L H 0.908 F H 0.830 K C 0.712 L C 0.837 N C 0.951 L C 0.940 D C 0.929 K H 0.912 L H 0.943 K H 0.971 L H 0.972 V H 0.974 D H 0.980 Y H 0.976 A H 0.970 S H 0.965 Y H 0.932 G H 0.830 E H 0.712 L H 0.772 A H 0.707 S H 0.597 S C 0.523 G C 0.896 A C 0.811 K C 0.860 H C 0.931 A C 0.888 D C 0.851 N C 0.602 V H 0.814 A H 0.846 P H 0.882 A H 0.890 I H 0.812 F H 0.710 G C 0.683 G C 0.739 F E 0.585 T E 0.844 M E 0.923 V E 0.901 T E 0.794 N E 0.498 Y C 0.773 E C 0.917 P C 0.906 L C 0.599 E E 0.719 V E 0.817 L E 0.815 H E 0.776 I E 0.660 P C 0.542 I C 0.721 D C 0.808 F C 0.768 K C 0.781 L C 0.630 D E 0.763 I E 0.964 L E 0.976 I E 0.983 A E 0.948 I E 0.668 P C 0.760 N C 0.877 I C 0.733 S C 0.638 I C 0.686 N C 0.786 T H 0.833 K H 0.968 E H 0.982 A H 0.976 R H 0.974 E H 0.890 I H 0.875 L H 0.598 P H 0.538 K H 0.509 A C 0.701 V C 0.828 G C 0.863 L H 0.956 K H 0.973 D H 0.974 L H 0.947 V H 0.939 N H 0.946 N H 0.929 V H 0.969 G H 0.983 K H 0.988 A H 0.993 C H 0.997 G H 0.999 M H 0.999 V H 0.999 Y H 0.998 A H 0.997 L H 0.991 Y H 0.967 N H 0.809 K C 0.898 D C 0.818 K H 0.814 S H 0.889 L H 0.916 F H 0.898 G H 0.911 R H 0.896 Y H 0.843 M H 0.698 M H 0.737 S H 0.688 D H 0.528 K H 0.574 V H 0.621 I H 0.655 E H 0.685 P H 0.811 V H 0.802 R H 0.820 G H 0.840 K H 0.833 L H 0.806 I H 0.684 P H 0.808 N H 0.896 Y H 0.960 F H 0.982 K H 0.989 I H 0.990 K H 0.987 E H 0.979 E H 0.965 V H 0.931 K H 0.854 D H 0.709 K C 0.912 V C 0.783 Y E 0.519 G E 0.771 I E 0.867 T E 0.819 I E 0.702 S C 0.600 G C 0.742 S C 0.736 G C 0.673 P C 0.498 S E 0.391 I E 0.544 I E 0.530 A E 0.601 F E 0.511 P C 0.658 K C 0.818 E C 0.734 E C 0.659 F H 0.640 I H 0.895 D H 0.963 E H 0.982 V H 0.992 E H 0.994 N H 0.994 I H 0.990 L H 0.980 R H 0.963 D H 0.935 Y H 0.847 Y H 0.753 E H 0.733 N H 0.628 T H 0.571 I H 0.414 R C 0.365 T C 0.464 E C 0.621 V C 0.814 G C 0.909 K C 0.666 G E 0.532 V E 0.706 E E 0.759 V E 0.584 V C 0.698 END