# TARGET T0114 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0114.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1.86607 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.255 0.066 0.680 2 I 0.290 0.041 0.669 3 N 0.188 0.021 0.791 4 R 0.170 0.229 0.601 5 T 0.233 0.213 0.554 6 D 0.212 0.211 0.577 7 C 0.119 0.124 0.757 8 N 0.096 0.108 0.796 9 E 0.100 0.138 0.763 10 N 0.146 0.111 0.743 11 S 0.408 0.069 0.524 12 Y 0.629 0.067 0.304 13 L 0.766 0.075 0.159 14 E 0.849 0.056 0.095 15 I 0.769 0.058 0.173 16 H 0.520 0.084 0.396 17 N 0.125 0.107 0.768 18 N 0.089 0.147 0.764 19 E 0.064 0.111 0.825 20 G 0.036 0.017 0.947 21 R 0.181 0.035 0.784 22 D 0.227 0.032 0.740 23 T 0.528 0.060 0.412 24 L 0.771 0.043 0.186 25 C 0.770 0.051 0.179 26 F 0.681 0.067 0.252 27 A 0.441 0.054 0.504 28 N 0.291 0.061 0.648 29 A 0.109 0.092 0.798 30 G 0.083 0.039 0.879 31 T 0.244 0.019 0.737 32 M 0.411 0.015 0.575 33 P 0.637 0.020 0.343 34 V 0.866 0.019 0.114 35 A 0.903 0.023 0.074 36 I 0.930 0.019 0.051 37 Y 0.823 0.038 0.139 38 G 0.552 0.019 0.430 39 V 0.557 0.019 0.424 40 N 0.647 0.025 0.328 41 W 0.715 0.048 0.237 42 V 0.624 0.094 0.282 43 E 0.536 0.105 0.359 44 S 0.223 0.114 0.663 45 G 0.082 0.039 0.879 46 N 0.100 0.015 0.885 47 N 0.325 0.024 0.651 48 V 0.781 0.025 0.194 49 V 0.887 0.030 0.083 50 T 0.919 0.035 0.046 51 L 0.882 0.051 0.067 52 Q 0.802 0.074 0.124 53 F 0.709 0.114 0.177 54 Q 0.406 0.256 0.337 55 R 0.250 0.238 0.513 56 N 0.080 0.181 0.739 57 L 0.046 0.179 0.775 58 S 0.059 0.134 0.807 59 D 0.051 0.054 0.895 60 P 0.064 0.125 0.810 61 R 0.107 0.136 0.758 62 L 0.131 0.236 0.633 63 E 0.201 0.255 0.544 64 T 0.466 0.262 0.273 65 I 0.711 0.145 0.144 66 T 0.733 0.093 0.174 67 L 0.468 0.336 0.197 68 Q 0.327 0.331 0.342 69 K 0.233 0.355 0.412 70 W 0.194 0.267 0.538 71 G 0.114 0.099 0.787 72 S 0.143 0.058 0.799 73 W 0.115 0.082 0.803 74 N 0.050 0.034 0.916 75 P 0.029 0.168 0.803 76 G 0.044 0.208 0.748 77 H 0.189 0.259 0.552 78 I 0.331 0.351 0.318 79 H 0.376 0.331 0.292 80 E 0.484 0.287 0.229 81 I 0.511 0.312 0.177 82 L 0.525 0.343 0.132 83 S 0.634 0.246 0.120 84 I 0.648 0.182 0.171 85 R 0.665 0.105 0.231 86 I 0.495 0.064 0.441 87 Y 0.082 0.013 0.905